DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and rbm15b

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:XP_002935665.2 Gene:rbm15b / 100495588 XenbaseID:XB-GENE-961063 Length:786 Species:Xenopus tropicalis


Alignment Length:828 Identity:182/828 - (21%)
Similarity:281/828 - (33%) Gaps:242/828 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   425 VPTHPIRTRHNLHGRSTTSSSRSHSRSPSSYSSSHSSSSSSHSSSHSHASSPVQSSGNCAMAEGR 489
            :|||..|.|  ||.:          |:..:.....:||.....|....:....||.|....|..|
 Frog     6 LPTHCGRWR--LHSK----------RASPACGDGAASSQQRDVSMKRQSERGEQSPGRAKRARER 58

  Fly   490 SSRTVNSVTVTSNSSNPSGTAVTVSSAGVGGGCGSSSSSSSSSSSSGSS------CLTANPVVHS 548
            ......:...:|........|            |:|||||||||.....      .|||......
 Frog    59 REEAGGAHHKSSGRRERPNQA------------GASSSSSSSSSRRPRDPPPRPLLLTAPAEAPG 111

  Fly   549 EDNRPLAIRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSE--RYALVCFKKPDDVEKA 611
            .:.:.|.|  .||.:...|..|:|.||..:::.|.:: || :....|  |.|.:.|::|.:..:|
 Frog   112 LEYKTLLI--SNLGSALPDPLLEDWLFRHFQRFGDIS-VK-LSHTPELGRVAYINFRRPAEARQA 172

  Fly   612 LEVSHDKHFFGCKIEVEPYQGYDVEDNEFRPYEAEL----------------------------- 647
            .........:..::.|||   ...:....||..:.|                             
 Frog   173 RHAKVRPVLYDRQLRVEP---VFTQQPTRRPEPSPLSLTSLPSYPRSTSPRHLLLPSSLTSTAAS 234

  Fly   648 -DEYHP------------------------------KSTRTLFIGNLEKDITAGELRSHFEAFGE 681
             |.|:|                              ::||.||||||:..::..:||..|:.:|.
 Frog   235 GDGYYPLYEERVRGATYGMSSTSTADDEQLAPEDDHRATRNLFIGNLDHMVSEVDLRRAFDKYGP 299

  Fly   682 IIEIDIKKQGLN---AYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGKSMPTNCVWIDGVDE 743
            |.|:.||:.|..   ||||.::.::....:|...|.|..||.|.:|:|:||..|:..:|:.|:..
 Frog   300 IEEVVIKRPGRGQGAAYAFLRFQNLDMAHRAKLAMSGRLLGRNAMKIGYGKPNPSTRLWVGGLGP 364

  Fly   744 KVSESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMRGTILRRKKLQVDFASREC 808
            ..|.:.|..:|.|||::..|...:....|.:.|:.:..||||...|||..|..::|:||||:...
 Frog   365 NTSLAALAREFDRFGSIRTVDYVKGDSFAYIQYESLDAAQAACTQMRGFALGDRRLRVDFATVSP 429

  Fly   809 QDA--------------------------------------------------FYDKQEK----- 818
            .:|                                                  .|..:|:     
 Frog   430 DEAAAAASRYAPLQTTPYPLPLPYELLQPEAYSRHRTALDPDLRVRDRTPPHLLYSDRERPFVEA 494

  Fly   819 ----QQQQSSGSNPRFSRYE--------SSASSLQSRSRASSFSRHQNNSNDDCSP--------- 862
                .:::|||...|....:        ||:.:.:.|.|..|.|..:..|..:.||         
 Frog   495 GWVNSERRSSGQGARSRSGDRGGGGGGGSSSKTREERRRRRSLSSDRVRSRAERSPDRQRREPPE 559

  Fly   863 --INTPGGASSGISSASNLINQSTSINISNIGTNACSAMPAPSLASAVVSCNVNASGTVPASTSM 925
              .:||.........:|....:..:.:......|.....|.|                 ||....
 Frog   560 RDPSTPPSPQHNHRPSSQDKPRPPTPDPPQPRRNHHPRPPEP-----------------PAERQS 607

  Fly   926 PSGVSSSSSSLPMSPAALAQRHRMVRNARQTVDCDFNEVGR------LRFRSSEEVSGGAGNSTQ 984
            | ||....:..|:...     |.:::|:.......|.|..|      |:.|||  .|||:....:
 Frog   608 P-GVEKGRTLPPVWCG-----HLVLKNSCFPTYLHFLEGDRDVPGALLKDRSS--TSGGSLAQLK 664

  Fly   985 F-EDVRCDSP----VT--ARQGS--------AVNCFTGPTAAVGE---------SIDGTLNNNQI 1025
            . :.:|.|.|    ||  .|||:        |........|..||         ::...|...|.
 Frog   665 IAQRLRLDQPKLEEVTRKVRQGTAGGYAVLLATQAPQNEGAIPGEPGLQRRLLRNLVSYLKQKQA 729

  Fly  1026 TGGAEGFTGSGGSILSRRRCGK----TPKDLHPVHNQRIQ-LAEQVEE 1068
            .|...  ...|||...|...|.    .|.|.|.::.|..| |..::||
 Frog   730 AGVIS--LPVGGSNKGRDPSGMLYAFPPCDFHQLYQQSAQRLVGKLEE 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795 17/74 (23%)
RRM3_SHARP 654..726 CDD:240796 28/74 (38%)
RRM4_SHARP 727..803 CDD:240797 24/75 (32%)
RILP-like 1997..>2055 CDD:304877
SPOC 5404..5527 CDD:285043
rbm15bXP_002935665.2 RRM1_RBM15B 113..192 CDD:240998 21/85 (25%)
RRM2_RBM15B 266..350 CDD:241000 29/83 (35%)
RRM_SF 353..426 CDD:388407 24/72 (33%)
SPOC 616..783 CDD:369497 41/169 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D367857at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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