DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ScpX and scp2

DIOPT Version :9

Sequence 1:NP_524715.2 Gene:ScpX / 44183 FlyBaseID:FBgn0015808 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001015795.1 Gene:scp2 / 548512 XenbaseID:XB-GENE-975762 Length:536 Species:Xenopus tropicalis


Alignment Length:540 Identity:318/540 - (58%)
Similarity:409/540 - (75%) Gaps:12/540 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVVGVGMTKFEKPGRQADVCYPDFAREAITKALQDAGIKYEEVQQAVAGYVYGDSTCGQRAIY- 69
            |||||||||||.||..:.|  |||.|:||..:||.|:||.|..|:||..||||||||||||||| 
 Frog     8 VYVVGVGMTKFMKPRDELD--YPDMAKEAGQQALADSGIPYSCVEQACVGYVYGDSTCGQRAIYH 70

  Fly    70 EVGMTGIPVYNVNNNCSTGSSALYLAKQIVESGNADCVLALGFEKMERGSLSSKYFDRANPMERH 134
            .:|:||||:.||||||||||:||::|:|:|:.|.|||||||||||||||||.||:.||.|||::|
 Frog    71 SLGLTGIPIINVNNNCSTGSTALFMARQLVQGGLADCVLALGFEKMERGSLQSKFTDRVNPMDKH 135

  Fly   135 ITEMGELAEIGAGPMAAQIFGNAGKEHMKKYGTKPEHFGKIAWKNHKHSVNNPYSQFRDEYTLEQ 199
            :..|.....:.|.|:|.|:||.||.|||:|||||.|||.||||||||||||||.|||||||:|::
 Frog   136 LEVMINKYGLAAAPVAPQMFGGAGIEHMEKYGTKKEHFAKIAWKNHKHSVNNPLSQFRDEYSLDE 200

  Fly   200 IMKSPQVVEGVLTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGMEMASDPASTFADKSL 264
            :|||.::.: .||.|||||||||:.||::.||.||.||||:.:||:|:..||.:|..|||.:.|.
 Frog   201 VMKSRKIYD-FLTILQCCPTSDGAAAAVIVSEDFVHRHGLQGKAVQILAQEMVTDTPSTFQENSC 264

  Fly   265 MKIAGTDMTRLATQRLFAKSGYKPQDVQVVELHDCFSANELITYEALGLCGEGNAGEFIDAGDNT 329
            :|:.|.|||:.|..:.:.|:|.:|:||.|:|||||||||||||||||.||..|.||..||.||||
 Frog   265 IKMVGYDMTKTAADKCYEKAGVRPEDVDVIELHDCFSANELITYEALSLCPPGGAGYLIDKGDNT 329

  Fly   330 YGGKFVVNPSGGLISKGHPLGATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVAL 394
            |||::|:||||||||||||||||||||||||||||||.|.:||||.|::|||||:||||||||::
 Frog   330 YGGRWVINPSGGLISKGHPLGATGLAQCAELCWQLRGQAGRRQVPGAKIALQHNIGLGGAVVVSI 394

  Fly   395 YRLGFPAANSVVRNLTAAGKAATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIYGFKVNNGPN 459
            |::|||  :|..::........::|:|||...:.|.:|:.::|:.:..::|:..|:.|||.:||.
 Frog   395 YK
MGFP--DSAAKSSQIHMVPTSAEEGFKAQFVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPG 457

  Fly   460 GQTGFWVIDAKQGKGKIIFNGTQKCDVTFIISDDDVFELLTGKLPPQKAFFQGKIKIQGNMGFAM 524
            |:...||:|.|.|||.:..|..:|.|.|..::|.|:..|:|||:.||.||||||:||.||||.||
 Frog   458 GKEATWVVDVKNGKGCVDVNSDKKADCTITMADADLLALMTGKMNPQTAFFQGKLKITGNMGMAM 522

  Fly   525 KLMDLQRSAQGRIEELRSKL 544
            ||..||      ::.:::||
 Frog   523 KLQSLQ------LQPVKAKL 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScpXNP_524715.2 PRK08256 5..396 CDD:181327 259/390 (66%)
SCP-x_thiolase 9..395 CDD:238425 256/386 (66%)
SCP2 429..529 CDD:280250 46/99 (46%)
scp2NP_001015795.1 PRK08256 6..396 CDD:181327 259/390 (66%)
SCP2 441..527 CDD:376720 43/85 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 268 1.000 Domainoid score I1832
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37717
Inparanoid 1 1.050 653 1.000 Inparanoid score I779
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185465at33208
OrthoFinder 1 1.000 - - FOG0006286
OrthoInspector 1 1.000 - - otm48255
Panther 1 1.100 - - LDO PTHR24314
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4572
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.160

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