DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ScpX and hsdl2

DIOPT Version :10

Sequence 1:NP_524715.2 Gene:ScpX / 44183 FlyBaseID:FBgn0015808 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_955893.1 Gene:hsdl2 / 322347 ZFINID:ZDB-GENE-030131-1066 Length:415 Species:Danio rerio


Alignment Length:389 Identity:75/389 - (19%)
Similarity:125/389 - (32%) Gaps:130/389 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 TLEQIMKSPQVVEGV------LTKLQCCPTSDGSGAAILASEAFVRRHGLEKQAVEIVGMEMASD 254
            ||:..||...::.|:      ||...|.|                  |.|:.:...|:.:   |.
Zfish   110 TLQTPMKKADLMLGINLRGTYLTSKLCIP------------------HLLKSKNPHILNL---SP 153

  Fly   255 PAST----FADKSLMKIA--GTDMTRLATQRLFAKSGYKPQDVQVVELHDCFSANEL-----ITY 308
            |.:.    |.:.:...||  |..|..|.....|..|               .:.|.|     |..
Zfish   154 PLNLNPIWFKNHTAYTIAKYGMSMCVLGMAEEFRGS---------------IAVNALWPKTAIQT 203

  Fly   309 EALGLCGEGNAGE-------FIDAG------DNTYGGKFVVN----PSGGL-------ISKGHPL 349
            .|:.:.|....|:       ..||.      ..::.|:||::    ...|:       :..||||
Zfish   204 AAMDMLGGSEVGKQCRKVEIMADAAYAIFKQPTSFTGQFVIDEDILKKEGIKDFDVYAVEPGHPL 268

  Fly   350 GATGLAQCAELCWQLRGLAEKRQVPNAQLALQHNLGLGGAVVVALYRLGFPAANSVVRNLTAAGK 414
                                   :|:                  .:..|.|  ..:|:::.|.|.
Zfish   269 -----------------------LPD------------------FFLDGQP--EDLVKHMEAHGA 290

  Fly   415 ----AATSEDGFKVAPLLKLLEQAMQEDKDNLIEKVRAIYGFKVNNGPNGQTGFWVIDAKQGKGK 475
                .....|.....|:.::...........:::..:.:|.|   |......|.|.:|.|...|.
Zfish   291 TPAFTTAKADPVAAGPVSEMFNTIRGIISPEMVKTTQGVYKF---NLAGEHAGVWYLDLKNDAGS 352

  Fly   476 IIFNGTQ--KCDVTFIISDDDVFELLTGKLPPQKAFFQGKIKIQGNMGFAMKLMDLQRSAQGRI 537
             ..||..  |.||...:..:|..::..|||.|..||..||:.|:|:||.|:||..:....:.::
Zfish   353 -AGNGEPPVKADVVMSMDSEDFVKMFGGKLKPTMAFMSGKLTIKGDMGLAIKLEKMMAMMKSKL 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScpXNP_524715.2 PRK08256 5..396 CDD:181327 39/240 (16%)
SCP2 428..531 CDD:460423 29/104 (28%)
hsdl2NP_955893.1 HSDL2_SDR_c 8..248 CDD:187663 33/173 (19%)
SCP2 319..411 CDD:442486 29/95 (31%)

Return to query results.
Submit another query.