DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoip and SNU13

DIOPT Version :9

Sequence 1:NP_001260293.1 Gene:hoip / 44173 FlyBaseID:FBgn0286786 Length:127 Species:Drosophila melanogaster
Sequence 2:NP_001003796.1 Gene:SNU13 / 4809 HGNCID:7819 Length:128 Species:Homo sapiens


Alignment Length:128 Identity:100/128 - (78%)
Similarity:116/128 - (90%) Gaps:1/128 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTE-EVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64
            ||| :|||||:|||||.||.|:::|:||:.||.||||||||||||||||:::.:|:|.||||:||
Human     1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65

  Fly    65 LLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV 127
            :||||||||||||||||||||||||||||||||::|||||..||||||.||.||||.||||||
Human    66 ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoipNP_001260293.1 SNU13 6..127 CDD:411046 94/120 (78%)
SNU13NP_001003796.1 SNU13 7..128 CDD:411046 94/120 (78%)
Interaction with U4 snRNA and U4atac snRNA. /evidence=ECO:0000269|PubMed:17412961, ECO:0000269|PubMed:21784869 36..48 11/11 (100%)
Important for U4 snRNA-binding. /evidence=ECO:0000269|PubMed:10545122 96..128 24/31 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159209
Domainoid 1 1.000 156 1.000 Domainoid score I4200
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3672
Inparanoid 1 1.050 205 1.000 Inparanoid score I3733
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62158
OrthoDB 1 1.010 - - D1497609at2759
OrthoFinder 1 1.000 - - FOG0002761
OrthoInspector 1 1.000 - - oto91311
orthoMCL 1 0.900 - - OOG6_101116
Panther 1 1.100 - - LDO PTHR23105
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1366
SonicParanoid 1 1.000 - - X1617
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1514.840

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