DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hoip and rps12

DIOPT Version :9

Sequence 1:NP_001260293.1 Gene:hoip / 44173 FlyBaseID:FBgn0286786 Length:127 Species:Drosophila melanogaster
Sequence 2:NP_001269106.1 Gene:rps12 / 337007 ZFINID:ZDB-GENE-030131-8951 Length:132 Species:Danio rerio


Alignment Length:107 Identity:29/107 - (27%)
Similarity:51/107 - (47%) Gaps:10/107 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDA-EPIEILLHLPLLCEDKNVPYVFVRSKQA 87
            :|:.||.::.|.:|..||.|.|::..|.:.|||.:. ||:.:.| :..||.:..:..:.|...:.
Zfish    21 VLKTALIHDGLARGIREAAKALDKRQAHLCVLAANCDEPMYVKL-VEALCAEHQINLIKVDDNKK 84

  Fly    88 LGRACGV--------SRPIVACSVTTNEGSQLKSQITSIQQE 121
            ||...|:        .|.:|.||....:....:||...:.:|
Zfish    85 LGEWVGLCKIDREGKPRKVVGCSCVVIKDYGKESQAKDVIEE 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoipNP_001260293.1 SNU13 6..127 CDD:411046 29/107 (27%)
rps12NP_001269106.1 Ribosomal_L7Ae 16..111 CDD:396000 26/90 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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