DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX1 and RA-5

DIOPT Version :10

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_171715.1 Gene:RA-5 / 837023 AraportID:AT1G02130 Length:203 Species:Arabidopsis thaliana


Alignment Length:169 Identity:66/169 - (39%)
Similarity:100/169 - (59%) Gaps:3/169 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNIILDEVKIKLQIWDTAGQERYRA 71
            |:|::|..||||:.|::|:..::.  .||.:.||.|.|....:..|...|||||||||||||:|.
plant    10 KLLLIGDSGVGKSCLLLRFSDDSY--VESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72

  Fly    72 VAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAF 136
            :...|||.|:..|:|:|:|..::|..:|.|:.|:.|...|.:...|||||.|:...||:..|.|.
plant    73 ITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAK 137

  Fly   137 VFATSIGATYFETSTETDQGLEQVFISTAQGL-VRLADE 174
            .||..||..:.|||.:....:||.|::.:..: .|:|.:
plant   138 AFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQ 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Rab 7..166 CDD:206640 64/158 (41%)
RA-5NP_171715.1 Rab1_Ypt1 7..172 CDD:206661 64/163 (39%)

Return to query results.
Submit another query.