DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX1 and rab24

DIOPT Version :9

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001025141.1 Gene:rab24 / 574423 ZFINID:ZDB-GENE-050706-110 Length:202 Species:Danio rerio


Alignment Length:170 Identity:65/170 - (38%)
Similarity:99/170 - (58%) Gaps:12/170 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVP---TIAVSFFTCNIILDEVKIKLQIWDTAG 65
            ::.||::||...||||.||.||:    ||:....|   ||..:|....:.:.|..|.|.||||||
Zfish     6 VDAKVVMLGKESVGKTSLVERYV----HRRFLVGPYQNTIGAAFVAKALNVGEKVITLGIWDTAG 66

  Fly    66 QERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDM----QA 126
            .|||.|::.:|||.|.|||:.:|||...:|...:.|::|| :|.::...:.|.|.|.|:    ::
Zfish    67 SERYEAMSRIYYRGARAAIVCYDLTDSSSFGRARFWVKEL-QNCEEHCKIYLCGTKSDLIEADRS 130

  Fly   127 QRAVSREEAFVFATSIGATYFETSTETDQGLEQVFISTAQ 166
            .|.|...:...||..|||.:||||::|.:.:::||...|:
Zfish   131 TRQVDYHDVQDFADEIGAQHFETSSKTGKNVDEVFQKVAE 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Ras 7..166 CDD:278499 64/165 (39%)
Rab 7..166 CDD:206640 64/165 (39%)
rab24NP_001025141.1 Rab24 8..200 CDD:133318 65/168 (39%)
Ras 9..171 CDD:278499 65/167 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0092
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.