DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX1 and Rab19

DIOPT Version :9

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001261575.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster


Alignment Length:198 Identity:70/198 - (35%)
Similarity:106/198 - (53%) Gaps:17/198 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNIILDEVKIKLQIWDTAGQERYRA 71
            |::::|..|.|||.:|.|:  .|.:..|....||.|.|....|.::..:|||||||||||||:|.
  Fly    23 KIVLIGDCGTGKTCIVDRF--KTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQERFRT 85

  Fly    72 VAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAF 136
            :...|||:||..::|:|:|:..:|:.::.||:|:.|.....:::.|||||.|::.||.|..|||.
  Fly    86 ITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFEEAR 150

  Fly   137 VFATSIGATYF--ETSTETDQGLEQVFISTAQGLVRLADE-------------GKSPSLRSFQST 186
            .....|....|  |||.:.:..:|..|...|..|.|..|.             |:...|:|..|:
  Fly   151 QMCQYIPEILFVMETSAKENMNVEDAFRCLANELKRQHDANNVEEVPENTITLGQGKPLKSCSSS 215

  Fly   187 DSL 189
            .:|
  Fly   216 CNL 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Ras 7..166 CDD:278499 61/160 (38%)
Rab 7..166 CDD:206640 61/160 (38%)
Rab19NP_001261575.1 Rab19 19..184 CDD:133267 62/162 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454148
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24073
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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