DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX1 and Rab2

DIOPT Version :9

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001260732.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster


Alignment Length:173 Identity:63/173 - (36%)
Similarity:101/173 - (58%) Gaps:10/173 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLHRKESEVP----TIAVSFFTCNIILDEVKIKLQIWDTAGQE 67
            |.:::|..||||:.|::::......      |    ||.|.|....|.:|..:||||||||||||
  Fly     8 KYIIIGDTGVGKSCLLLQFTDKRFQ------PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66

  Fly    68 RYRAVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSR 132
            .:|::...|||.|..|:||:|:|:.:||..:.:|:::..::....|::.|:|||.|:.::|.|.:
  Fly    67 AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVKK 131

  Fly   133 EEAFVFATSIGATYFETSTETDQGLEQVFISTAQGLVRLADEG 175
            ||...||...|..:.|||..|...:|:.||:||:.:.....||
  Fly   132 EEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEG 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Ras 7..166 CDD:278499 60/162 (37%)
Rab 7..166 CDD:206640 60/162 (37%)
Rab2NP_001260732.1 PLN03108 1..213 CDD:178655 63/173 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454205
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.