DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX1 and Rab39

DIOPT Version :10

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_572405.2 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster


Alignment Length:215 Identity:68/215 - (31%)
Similarity:114/215 - (53%) Gaps:21/215 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNI-ILDEVKIKLQIWDTAGQERYR 70
            :::::|...|||:.| :::..:....:.|: ||:.|.||...| :.|..:||||:||||||||:|
  Fly    11 RLILIGDSTVGKSSL-LKFFTDGKFAELSD-PTVGVDFFARLIEMKDGTQIKLQLWDTAGQERFR 73

  Fly    71 AVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPM-ILTLVGNKMDM---QAQRAVS 131
            ::...||||:...:||:|::.:.:|..|..|:.|..|:::... :..|||.|:|:   ...|.|:
  Fly    74 SITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVT 138

  Fly   132 REEAFVFATSIGATYFETSTETDQGLEQVF-ISTAQGLVRL------ADEGKSPSLRSFQSTDSL 189
            .|||..||...|..:.|||..:...:|:.| :.|.:...|:      |::|.......|...:||
  Fly   139 TEEAQKFAKQHGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFSRPNSL 203

  Fly   190 AYTNTNTAFSHTVAALARSS 209
                   .|:..||...:||
  Fly   204 -------DFNLVVAEPEKSS 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Rab 7..166 CDD:206640 57/164 (35%)
Rab39NP_572405.2 Rab39 8..218 CDD:133311 68/215 (32%)

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