DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX1 and Rab5b

DIOPT Version :9

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001073405.1 Gene:Rab5b / 288779 RGDID:1306489 Length:215 Species:Rattus norvegicus


Alignment Length:172 Identity:69/172 - (40%)
Similarity:108/172 - (62%) Gaps:4/172 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNIILDEVKIKLQIWDTAGQERYRA 71
            |:::||...|||:.||:|::|...|  |.:..||..:|.|.::.||:..:|.:||||||||||.:
  Rat    22 KLVLLGESAVGKSSLVLRFVKGQFH--EYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHS 84

  Fly    72 VAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSREEAF 136
            :||||||.|.|||:|:|:|..:||...|:|::||.|.....:::.|.|||.|:..:|.|..|||.
  Rat    85 LAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQ 149

  Fly   137 VFATSIGATYFETSTETDQGLEQVFISTAQGLVRLADEGKSP 178
            .:|......:.|||.:|...:..:|::.|:.|.:  .|.::|
  Rat   150 AYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK--SEPQNP 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Ras 7..166 CDD:278499 65/158 (41%)
Rab 7..166 CDD:206640 65/158 (41%)
Rab5bNP_001073405.1 Rab5_related 20..182 CDD:206653 66/161 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0092
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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