DRSC/TRiP Functional Genomics Resources

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Protein Alignment RabX1 and C52B11.5

DIOPT Version :10

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_508236.1 Gene:C52B11.5 / 183717 WormBaseID:WBGene00016874 Length:238 Species:Caenorhabditis elegans


Alignment Length:199 Identity:43/199 - (21%)
Similarity:87/199 - (43%) Gaps:19/199 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVLVLGSRGVGKTRLVIRYIKNTLH-RKESE--VPTIAVSFFTCNIILDEVKIKLQIWDTAGQER 68
            |::|:|::..||:..:.|......| .|::|  ...||...|...:.::  .|:..:.....::.
 Worm    26 KIIVVGAKNAGKSTFIERVEFGKFHEEKQTEKLYRVIAKKVFEQTLTVE--LIEKDLGGLTNEDN 88

  Fly    69 YRAVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSRE 133
            ......|  |:.:|.:|.:.....::|.::|..:..:.|.:.....:|:||.|.|:: :..|..:
 Worm    89 GFKKTEM--RDVDAVLLFYAADDLESFKQLKENLVHVQRKIPPNANITVVGTKADVK-EMQVQWQ 150

  Fly   134 EAFVFATSIGATYFETSTETDQGLEQVFISTAQGLVRLADEGKSPSLRSFQSTDSLAYTNTNTAF 198
            |...||.:.|.:.||||::|...:|.:.....:.:..          |.|.|.|....:| ...:
 Worm   151 EVDSFAENQGFSCFETSSKTGVNVEIILHDILETIFE----------RRFASDDDEVLSN-QPVY 204

  Fly   199 SHTV 202
            :.||
 Worm   205 ASTV 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Rab 7..166 CDD:206640 36/161 (22%)
C52B11.5NP_508236.1 P-loop containing Nucleoside Triphosphate Hydrolases 25..183 CDD:476819 36/161 (22%)

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