DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RabX1 and rab31

DIOPT Version :9

Sequence 1:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster
Sequence 2:NP_001093711.1 Gene:rab31 / 100101725 XenbaseID:XB-GENE-489298 Length:194 Species:Xenopus tropicalis


Alignment Length:192 Identity:71/192 - (36%)
Similarity:113/192 - (58%) Gaps:16/192 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVPTIAVSFFTCNIILDEVKIKLQIWDTAGQERY 69
            |.||.:||..||||:.:|.|::::  |...:..|||..||.|..:.......|..|||||||||:
 Frog     5 ELKVCLLGDTGVGKSSIVSRFVQD--HFDHNISPTIGASFMTKTVPSGNELHKFLIWDTAGQERF 67

  Fly    70 RAVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQAQRAVSREE 134
            .::||||||.:.||::|:|:|:..||..:|.|::||..:..:.:::.:.|||.|:...|.|:.::
 Frog    68 HSLAPMYYRGSAAAVIVYDITKQDTFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDTREVTMKD 132

  Fly   135 AFVFATSIGATYFETSTETDQGLEQVFISTAQGLVRLA------DEGKSPSLR----SFQST 186
            |..:|.||||...|||.:....:|::|    ||:.|..      :.|.:.:::    |||||
 Frog   133 AREYAESIGAIVVETSAKNAINVEELF----QGISRRIPPLDPHENGSNGAMKLGRQSFQST 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RabX1NP_524713.1 Ras 7..166 CDD:278499 61/158 (39%)
Rab 7..166 CDD:206640 61/158 (39%)
rab31NP_001093711.1 Rab5_related 5..167 CDD:206653 65/167 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D579042at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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