DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and PFS2

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_014082.1 Gene:PFS2 / 855399 SGDID:S000005261 Length:465 Species:Saccharomyces cerevisiae


Alignment Length:407 Identity:85/407 - (20%)
Similarity:147/407 - (36%) Gaps:80/407 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 VIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVV 330
            |:|...|..:||.......|.....|.......||.|:|        ...|.::.|:.....|||
Yeast    54 VVEPETSYTIDIMPPNAYRGRDRVINLPSKFTHLSSNKV--------KHVIPAIQWTPEGRRLVV 110

  Fly   331 GSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWD 395
            .:|          .|...:||.  ...|.|.:.....:.::|.....:.:.::.|...|.|.:|.
Yeast   111 ATY----------SGEFSLWNA--SSFTFETLMQAHDSAVTTMKYSHDSDWMISGDADGMIKIWQ 163

  Fly   396 NRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQ 460
            ........|.      ||||..:  ..|..:.|....::.|.|..|..|:..           ..
Yeast   164 PNFSMVKEID------AAHTESI--RDMAFSSNDSKFVTCSDDNILKIWNFS-----------NG 209

  Fly   461 RQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGL------RSG--VNEVYE-RHLGPITGI 516
            :|.:.::....     ::.|.....|.|.:.|||:..|      |||  ::.:.: :|    |.:
Yeast   210 KQERVLSGHHW-----DVKSCDWHPEMGLIASASKDNLVKLWDPRSGNCISSILKFKH----TVL 265

  Fly   517 STHYNQLSPDFGHLFLTSSIDWTIKLWSLK-DTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGS 580
            .|.:   .|..|:|.:..|.|.:.:::.:: ..|.|....|.:|| |.:.|.|::.::|......
Yeast   266 KTRF---QPTKGNLLMAISKDKSCRVFDIRYSMKELMCVRDETDY-MTLEWHPINESMFTLACYD 326

  Fly   581 GRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEW 645
            |.|..::|.|:...|..:|..|....:..:|:.|.| |:                 .|..::|..
Yeast   327 GSLKHFDLLQNLNEPILTIPYAHDKCITSLSYNPVG-HI-----------------FATAAKDRT 373

  Fly   646 SRFNTHLSEIKMNQSDE 662
            .||.|....|..|..|:
Yeast   374 IRFWTRARPIDPNAYDD 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922
WD40 316..632 CDD:421866 66/325 (20%)
WD40 repeat 316..365 CDD:293791 11/48 (23%)
WD40 repeat 371..409 CDD:293791 6/37 (16%)
WD40 repeat 418..457 CDD:293791 6/38 (16%)
WD40 repeat 469..555 CDD:293791 20/95 (21%)
WD40 repeat 561..599 CDD:293791 9/37 (24%)
WD40 repeat 607..633 CDD:293791 4/25 (16%)
PFS2NP_014082.1 WD40 93..377 CDD:238121 69/345 (20%)
WD40 repeat 98..133 CDD:293791 10/46 (22%)
WD40 repeat 139..175 CDD:293791 6/41 (15%)
WD40 repeat 180..216 CDD:293791 7/48 (15%)
WD40 repeat 223..257 CDD:293791 10/33 (30%)
WD40 repeat 264..299 CDD:293791 7/37 (19%)
WD40 repeat 307..346 CDD:293791 10/39 (26%)
WD40 repeat 353..377 CDD:293791 7/41 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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