DRSC/TRiP Functional Genomics Resources

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Protein Alignment sw and dync2i2

DIOPT Version :10

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001099160.1 Gene:dync2i2 / 794361 ZFINID:ZDB-GENE-070928-9 Length:501 Species:Danio rerio


Alignment Length:473 Identity:114/473 - (24%)
Similarity:204/473 - (43%) Gaps:60/473 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   232 ETEVK-KEVNE----LSEEQKQMIILSENFQ------RFVVRAGRVIERALSENVDIYTDYIGGG 285
            |||.: |:|:|    ..::..|.:.|..:..      .|:.||..|:.|.|.:|...:     ..
Zfish    38 ETETQAKDVSENGTQTQDQSGQTLSLDRDLTDFPGLLDFMRRAEDVVIRELVKNSKSH-----AF 97

  Fly   286 DSEEANDERSHARLS-LNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMV 349
            |..|.|.|..:..:| :.|:.:.:...|:..:||:.|:.....:..|....::...:.....|..
Zfish    98 DGFEVNWEEQNESVSCMYRLQHVDAQEKSLQVTSVSWNCTGSVIACGFGRVDDGDWSNEKACVCT 162

  Fly   350 WNT---KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 411
            ||.   ......|:.:....:.||..||....|:::.||.|||::|:||....:...:.:|.:||
Zfish   163 WNVDRQNLNPKRPDVIIDVATPVMCLCFHPVRPSVVAGGLYSGEVVVWDTSRSQDLILAQTGMSA 227

  Fly   412 AAHTHPVYCLQMV--GTQNAHNVISISSDGKLCSWSLD------MLS---------QPQDTLELQ 459
            ..|..|||.:..|  ..:...:|:|..|.|::..|::|      :||         .||.....:
Zfish   228 DTHREPVYQINWVPGARRGEFSVLSAGSGGRVLLWTIDGSEAKLLLSSGYALVRQQMPQSGAASK 292

  Fly   460 QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHG--------------LRSGVNEVYERHL 510
            .|.|..|.:|::|....::::.::|||.|.|...|...              ||:.:...:....
Zfish   293 TRGSLTIGVTAVALSPWDLDTFLVGSEGGLVLKCSFSSETAAAVPSDGESVILRAPMQFSFSPRG 357

  Fly   511 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFA 575
            |||.  |.|:   ||...:||::...|....|.|:....||.:...:..||..|.|||..|.:||
Zfish   358 GPIH--SVHF---SPFHRNLFVSVGTDGLAHLHSVLQPCPLLALRVSDSYVFGVRWSPTRPLVFA 417

  Fly   576 AVDGSGRLDLWNLNQDTEVPTASI--VVAGAPALNRVSWTPSGLH-VCIGDEAGKLYVYDVAENL 637
            ||.|.|.:.:::|.:.:..|.|:|  ...|.||. .:.:.|...: :.:|:..|.:.::.::..|
Zfish   418 AVTGQGLVQMFDLGRRSLRPVATIDQNAGGQPAY-CLEFNPKHTNLLAVGNADGSVNIWQLSAEL 481

  Fly   638 AQPSRDEWSRFNTHLSEI 655
            .:....|.:......:|:
Zfish   482 TEQGAKETAMLEQLANEV 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 105..135 CDD:463291
WD40 316..632 CDD:475233 89/352 (25%)
WD40 repeat 316..365 CDD:293791 8/51 (16%)
WD40 repeat 371..409 CDD:293791 12/37 (32%)
WD40 repeat 418..457 CDD:293791 13/55 (24%)
WD40 repeat 469..555 CDD:293791 24/99 (24%)
WD40 repeat 561..599 CDD:293791 15/37 (41%)
WD40 repeat 607..633 CDD:293791 3/26 (12%)
dync2i2NP_001099160.1 WD40 repeat 130..180 CDD:293791 8/49 (16%)
WD40 <163..478 CDD:441893 84/320 (26%)
WD40 repeat 187..229 CDD:293791 14/41 (34%)
WD40 repeat 235..296 CDD:293791 13/60 (22%)
WD40 repeat 301..338 CDD:293791 8/36 (22%)
WD40 repeat 361..399 CDD:293791 11/42 (26%)
WD40 repeat 403..442 CDD:293791 15/38 (39%)
WD40 repeat 450..477 CDD:293791 4/27 (15%)
Blue background indicates that the domain is not in the aligned region.

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