DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and dync1i1

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_009290517.1 Gene:dync1i1 / 561525 ZFINID:ZDB-GENE-061215-62 Length:647 Species:Danio rerio


Alignment Length:702 Identity:318/702 - (45%)
Similarity:431/702 - (61%) Gaps:113/702 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRKAELERKKAKLAALREEKDRRRREKEIKDME--EAAGRIGGGAGIDKDQRKDLDEMLSSLGV- 63
            |.||||||||.:||.:||||.|:..|::.|:.|  :....:...:.:|: :|::.:.:|.|:|: 
Zfish     6 DLKAELERKKQRLAQIREEKKRKEEERKKKESEMLQRPENVTEDSDLDR-KRRETEALLQSIGIS 69

  Fly    64 ---------------------------APVSEVLSSLSSVNSMTSDNSNT---------QTPDAS 92
                                       :|.|:.:|..|...|..|.:..|         .|..::
Zfish    70 PEPPLVQPLQLLTWDTCYFHYLVPTPMSPSSQSVSPPSETGSQESIDGGTVERYRTLQWDTDPSA 134

  Fly    93 LQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYME 157
            ||...:...|.:.|.|..|  .:...:..|||.:.|:|:|||                       
Zfish   135 LQLLADSVHGCRMQRLGAS--KIVQIDFMPKELVTYSKETQT----------------------- 174

  Fly   158 DWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 222
                                |....:.|..||||.|                       |....|
Zfish   175 --------------------PVASNQPEEEDDEELS-----------------------VPKSEP 196

  Fly   223 AITPLEIKKETEVKKEVN--ELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGG 285
            |...||.:|..|| :||:  ||:.|:|:.|:.||:|..|..|:.||:||.|:|:.||:.||.|..
Zfish   197 ASQQLEEEKTQEV-EEVHPRELTNEEKEQIVHSEDFLFFFDRSIRVVERVLAEDKDIFFDYSGRD 260

  Fly   286 DSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVW 350
            ..::..|.::.:.||.||.||||.|||:|.:||:|||..:|||:|.||:.||::|:||||||:||
Zfish   261 MEDKEGDLQAGSNLSFNRHFYDEHWSKHRVVTSLDWSPQYPELLVASYNTNEDAPHEPDGVVLVW 325

  Fly   351 NTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHT 415
            |.||||:|||.:|||||:|||..||:|:|||::||||||||.:||||..:|||:|||||||.|||
Zfish   326 NMKFKKATPEYIFHCQSSVMSVGFAQFHPNLVIGGTYSGQIAMWDNRSHRRTPVQRTPLSATAHT 390

  Fly   416 HPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINS 480
            |||||:.:||||||:|:|::|:|||:||||||||||||:::||...:||.:|:|.|||||:::|:
Zfish   391 HPVYCVNVVGTQNANNLITVSTDGKMCSWSLDMLSQPQESMELIYNKSKPVAVTCMAFPASDVNN 455

  Fly   481 LVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSP-DFGHLFLTSSIDWTIKLWS 544
            .|:|||:|.||:|||||.::|:.|:::.|.||:||||.| |.:.| ||.|||.|||.|||:||||
Zfish   456 YVVGSEEGTVYTASRHGSKAGIGEIFDGHQGPVTGISCH-NAVGPVDFSHLFTTSSFDWTVKLWS 519

  Fly   545 LKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNR 609
            .|..|||||||||:|||.||.||||||||||.|||:|||||||||..||||:||:.|.|..||||
Zfish   520 TKHNKPLYSFEDNADYVYDVMWSPVHPALFATVDGNGRLDLWNLNNYTEVPSASVSVEGGCALNR 584

  Fly   610 VSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 661
            |.|...|..|.:||..|::::|||.|.||.|..|:||:|...|.||:.|:.|
Zfish   585 VRWASGGREVAVGDSEGRVWIYDVGEQLAVPHTDDWSKFGRTLMEIQANRGD 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 9/27 (33%)
WD40 316..632 CDD:421866 205/316 (65%)
WD40 repeat 316..365 CDD:293791 31/48 (65%)
WD40 repeat 371..409 CDD:293791 25/37 (68%)
WD40 repeat 418..457 CDD:293791 27/38 (71%)
WD40 repeat 469..555 CDD:293791 52/86 (60%)
WD40 repeat 561..599 CDD:293791 30/37 (81%)
WD40 repeat 607..633 CDD:293791 11/25 (44%)
dync1i1XP_009290517.1 Dynein_IC2 147..175 CDD:288403 11/72 (15%)
WD40 215..608 CDD:225201 240/393 (61%)
WD40 284..607 CDD:295369 209/323 (65%)
WD40 repeat 292..337 CDD:293791 30/44 (68%)
WD40 repeat 347..388 CDD:293791 28/40 (70%)
WD40 repeat 394..437 CDD:293791 28/42 (67%)
WD40 repeat 443..490 CDD:293791 24/46 (52%)
WD40 repeat 498..530 CDD:293791 22/31 (71%)
WD40 repeat 536..574 CDD:293791 30/37 (81%)
WD40 repeat 582..608 CDD:293791 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573323
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.770

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