DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and CG13074

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_648835.1 Gene:CG13074 / 39760 FlyBaseID:FBgn0036567 Length:451 Species:Drosophila melanogaster


Alignment Length:571 Identity:103/571 - (18%)
Similarity:189/571 - (33%) Gaps:206/571 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 DVLSCHSSPLSGYMEDWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPP 207
            ||||.:|||:.                   |:.....||.:....|:           .|...||
  Fly     2 DVLSHYSSPIV-------------------EFPATQPLEKQHALVDN-----------CTGTDPP 36

  Fly   208 GYLTHGLPTVKDVAPAI-TPLEIKKETE--------VKKEVNELSEEQKQMIILSENFQRFVVRA 263
                   |..:|.|... ..|.:..:||        |:.:...|::..:|:..:.|   |.::..
  Fly    37 -------PPSQDAATGTQEKLHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVE---RELMNP 91

  Fly   264 GRVIER------ALSENVDIYTDY----IGGGDSEEANDERSHARLSLNRVFYDERWSKNRCI-- 316
            ..::|.      .|.|.:.:|| |    :||.::.:.        |::        |   .|:  
  Fly    92 TPLMEDLTMSQCRLEEKLQVYT-YQKLIMGGAENSQG--------LAI--------W---LCVHT 136

  Fly   317 --------TSM----DWSTHFPE---------LVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPE 360
                    |::    ||..|..:         :.||:               :|..|: .|:.| 
  Fly   137 NNAPVLVATTVAPHDDWCEHVDQQLKLFVPQRMSVGN---------------LVIYTE-AKTLP- 184

  Fly   361 DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW--------DNRV--QKRTPIQRTPLSAAAHT 415
                .:|.:.|.|...||..:..|.|..|::.:|        |:.|  ::...:..|..:|.|..
  Fly   185 ----LKSCLRSLCTNPFNKTMFAGSTMDGELFIWLYEQARGSDSSVDIKQLYSVSSTQGAAVALD 245

  Fly   416 HPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINS 480
            .|          ..|.:::..::|.:..|.|..    |..|:.:......::....|.....::.
  Fly   246 WP----------REHLLLACFANGSVRQWDLSR----QMALDWEYTLPATVSSEPTAMVTLGLDD 296

  Fly   481 LVMGSEDGYVYSASRHGLR-SGVNEV----YERHLGPI-TGISTHYNQLSPDFGHLFLTSS---- 535
            .|:|:.||.||.....|.: :.:.::    ..||...: |.:.|...      |:||:.|.    
  Fly   297 FVVGTNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEME------GNLFVLSCDLSG 355

  Fly   536 ---------IDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGS--------GRL 583
                     :|                 ||.:..::.:. .|....:..:.||:        |.|
  Fly   356 QAFYHDMRLVD-----------------EDMAQLIVQIP-LPFKNVIACSRDGNIIFCPANDGSL 402

  Fly   584 DLWNLNQDTEVPTASIVVAGAPALNRVS----WTPSGLHVCIGDEAGKLYV 630
            :.:.::......... .:.|..:|.|.|    |..:||:   |||....||
  Fly   403 EYYRVSDGAHAHVKG-GLRGKGSLIRSSDNGRWLIAGLY---GDEFQIFYV 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922
WD40 316..632 CDD:421866 67/379 (18%)
WD40 repeat 316..365 CDD:293791 10/71 (14%)
WD40 repeat 371..409 CDD:293791 11/47 (23%)
WD40 repeat 418..457 CDD:293791 5/38 (13%)
WD40 repeat 469..555 CDD:293791 17/104 (16%)
WD40 repeat 561..599 CDD:293791 5/45 (11%)
WD40 repeat 607..633 CDD:293791 11/28 (39%)
CG13074NP_648835.1 WD40 repeat 189..234 CDD:293791 10/44 (23%)
WD40 repeat 242..275 CDD:293791 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12442
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.110

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