DRSC/TRiP Functional Genomics Resources

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Protein Alignment sw and Dnai2

DIOPT Version :10

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001007727.1 Gene:Dnai2 / 360654 RGDID:1359602 Length:619 Species:Rattus norvegicus


Alignment Length:518 Identity:124/518 - (23%)
Similarity:222/518 - (42%) Gaps:93/518 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 PRKAHATDYYDEYNLNPGLEWEDEFTDDEESS----LQNLGNGFTSKLPPGYLTHGLPTVKDVAP 222
            |....|..|.:...::.|::.....::.|.::    ::|.|        ..::..|.|  |||  
  Rat    33 PNPELAALYVERNPVDTGIQCSASMSEHEANTERFEMENCG--------VNHVEGGWP--KDV-- 85

  Fly   223 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSEN--VDIYTDYIGGG 285
              .|.|:::....:|:|.:           .||:...|::.|.::|..:.:|  :|||.:|....
  Rat    86 --NPQELEQTIRFRKKVEK-----------DENYINAVMQLGSIMEHCIKQNNAIDIYEEYFDDE 137

  Fly   286 DSEEANDERSHARLSLNRVFYDERWSKNRCITSMDW-------------STHFPELVVGSYHNNE 337
            ::.|..:|...|: ::| ||.|.:..| |..|.:.|             ...|....:|..|::.
  Rat   138 EAVEVTEEAPSAK-TIN-VFRDPQEIK-RTATHLSWHPDGNKKLAVAYSCLQFQRSPMGMSHDSY 199

  Fly   338 ----ESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNP---NLILGGTYSGQIVLWD 395
                |:||.|:       ...|.|:|            ....::||   :::|||.|:|||..||
  Rat   200 IWDLENPNRPE-------IALKPSSP------------LITLEYNPKDSHVLLGGCYNGQIACWD 245

  Fly   396 NRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLEL-- 458
            .|  |.:.:........:|..|||....:.::......|.|:||::..|.:..:|:|.:.:.:  
  Rat   246 TR--KGSLVAELSTIEFSHRDPVYGTIWLQSKTGTECFSASTDGQVMWWDIRKISEPTEVVIMDI 308

  Fly   459 --QQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEV--YERHLGPITGISTH 519
              :::...|:...|:.|.:......::|:|.|.|.|.:|.........|  :..|.|||..:   
  Rat   309 TRKEQLENALGAISLEFESTLPTKFMVGTEQGIVISCNRKAKTPAEKIVCTFSGHHGPIYAL--- 370

  Fly   520 YNQLSPDFGHLFLTSSIDWTIKLWS--LKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGR 582
              |.:|.:...|||.. ||..::||  .:::..::: ..:..|:.|.|||||.||:|......|.
  Rat   371 --QRNPFYPKNFLTVG-DWAARIWSEESRESSIMWT-RYHMAYLSDGAWSPVRPAVFFTTKMDGT 431

  Fly   583 LDLWNLNQDTEVPTASIVVAGAPAL-NRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDE 644
            ||:|:|......|..|:.|...|.. .||..|  |..:..|.|.|...:.:|:.:|:...|:|
  Rat   432 LDIWDLVFKQCDPALSLKVCDDPLFCLRVQDT--GCLIACGSELGTTTLLEVSSSLSTLQRNE 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 105..135 CDD:463291
WD40 316..632 CDD:475233 85/344 (25%)
WD40 repeat 316..365 CDD:293791 12/65 (18%)
WD40 repeat 371..409 CDD:293791 13/40 (33%)
WD40 repeat 418..457 CDD:293791 9/38 (24%)
WD40 repeat 469..555 CDD:293791 22/89 (25%)
WD40 repeat 561..599 CDD:293791 15/37 (41%)
WD40 repeat 607..633 CDD:293791 7/26 (27%)
Dnai2NP_001007727.1 WD40 repeat 165..212 CDD:293791 9/53 (17%)
WD40 166..472 CDD:475233 83/335 (25%)
WD 1 214..254 16/53 (30%)
WD40 repeat 220..259 CDD:293791 13/40 (33%)
WD 2 261..302 11/40 (28%)
WD40 repeat 266..361 CDD:293791 19/94 (20%)
WD40 repeat 318..347 CDD:293791 7/28 (25%)
WD 3 362..401 13/44 (30%)
WD40 repeat 367..403 CDD:293791 10/41 (24%)
WD 4 405..445 15/39 (38%)
WD40 repeat 410..435 CDD:293791 12/24 (50%)
WD 5 450..489 11/40 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 566..619
Blue background indicates that the domain is not in the aligned region.

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