DRSC/TRiP Functional Genomics Resources

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Protein Alignment sw and Dync1i1

DIOPT Version :10

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_062107.2 Gene:Dync1i1 / 29564 RGDID:2512 Length:643 Species:Rattus norvegicus


Alignment Length:695 Identity:322/695 - (46%)
Similarity:431/695 - (62%) Gaps:103/695 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRKAELERKKAKLAALREEKDRRRREKEIK--DMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVA 64
            |.||||||||.:||.:||||.|:..|::.|  ||::....:...:.:|: :|::.:.:|.|:|::
  Rat     6 DLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDR-KRRETEALLQSIGIS 69

  Fly    65 PVSEVLSSL--------------------SSVNSMTSDNSNTQ-------------TPDASLQAT 96
            |...::..|                    ||.:..|...:.:|             |..:.||..
  Rat    70 PEPPLVQPLHFLTWDTCYFHYLVPTPMSPSSKSVSTPSEAGSQDDLGPLTRTLQWDTDPSVLQLQ 134

  Fly    97 VNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWWR 161
            .:.:.|.:...|.:|  .|...:..|:|.:.|:|:|||.         |:.|.|......|:...
  Rat   135 SDSELGRRLNKLGVS--KVTQVDFLPREVVSYSKETQTP---------LATHQSEEDEEDEEMVE 188

  Fly   162 PRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITP 226
            |:..|.::          ||.:|:..:.:|:             ||                   
  Rat   189 PKVGHDSE----------LENQDKKQETKEA-------------PP------------------- 211

  Fly   227 LEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEAN 291
                         .||:||:||.|:.||.|..|..|..|||||||:|:.||:.||.|....|:..
  Rat   212 -------------RELTEEEKQQILHSEEFLIFFDRTIRVIERALAEDSDIFFDYSGRELEEKDG 263

  Fly   292 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKK 356
            |.::.|.||.||.||||.|||:|.:|.||||..:|||:|.||.|||::|:|||||.:|||.||||
  Rat   264 DVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKK 328

  Fly   357 STPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCL 421
            :|||.||||||:|||.|||:|:|||::||||||||||||||..:|||:||||||||||||||||:
  Rat   329 TTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCV 393

  Fly   422 QMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSE 486
            .:||||||||:|::|:|||:|||||||||.||:::||...:||.:|:|.||||..::|:.|:|||
  Rat   394 NVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYNKSKPVAVTGMAFPTGDVNNFVVGSE 458

  Fly   487 DGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPL 551
            :|.||:|.|||.::|:.||:|.|.||:|||:.|......||.|||:|||.|||:|||:.|..|||
  Rat   459 EGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPL 523

  Fly   552 YSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSG 616
            ||||||:|||.||.||||||||||.|||.|||||||||.||||||||:.:.||.|||||.|...|
  Rat   524 YSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGG 588

  Fly   617 LHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 661
            ..|.:||..|::::|||.| ||.|..|||:||...|.||:.|::|
  Rat   589 KEVAVGDSEGRIWIYDVGE-LAVPHNDEWTRFARTLVEIRANRAD 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 105..135 CDD:463291 9/29 (31%)
WD40 316..632 CDD:475233 208/315 (66%)
WD40 repeat 316..365 CDD:293791 32/48 (67%)
WD40 repeat 371..409 CDD:293791 28/37 (76%)
WD40 repeat 418..457 CDD:293791 27/38 (71%)
WD40 repeat 469..555 CDD:293791 48/85 (56%)
WD40 repeat 561..599 CDD:293791 32/37 (86%)
WD40 repeat 607..633 CDD:293791 11/25 (44%)
Dync1i1NP_062107.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..65 23/59 (39%)
Interaction with DCTN1 2..123 31/117 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..123 4/26 (15%)
Dynein_IC2 141..171 CDD:463291 9/31 (29%)
Interaction with DYNLT1. /evidence=ECO:0000250|UniProtKB:O14576 145..161 4/17 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..219 19/115 (17%)
WD 1 283..332 31/48 (65%)
WD40 repeat 289..335 CDD:293791 30/45 (67%)
WD40 <316..605 CDD:441893 192/288 (67%)
WD 2 336..376 30/39 (77%)
WD40 repeat 344..383 CDD:293791 29/38 (76%)
WD 3 385..426 31/40 (78%)
WD40 repeat 391..432 CDD:293791 28/40 (70%)
WD 4 435..475 21/39 (54%)
WD40 repeat 440..479 CDD:293791 20/38 (53%)
WD 5 480..525 25/44 (57%)
WD40 repeat 486..527 CDD:293791 24/40 (60%)
WD 6 528..568 33/39 (85%)
WD40 repeat 533..571 CDD:293791 32/37 (86%)
WD 7 574..613 20/39 (51%)
WD40 repeat 579..605 CDD:293791 11/25 (44%)

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