DRSC/TRiP Functional Genomics Resources

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Protein Alignment sw and SdicB

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001303577.1 Gene:SdicB / 26067075 FlyBaseID:FBgn0283433 Length:533 Species:Drosophila melanogaster


Alignment Length:571 Identity:513/571 - (89%)
Similarity:517/571 - (90%) Gaps:46/571 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 LQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYME 157
            |::|.:..|||||||||||||||||||||||||||||||||||||||||||||:.          
  Fly     9 LRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAF---------- 63

  Fly   158 DWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 222
                                      |...|||||||||||||||||||||||||||||||||||
  Fly    64 --------------------------DAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAP 102

  Fly   223 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 287
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   103 AITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDS 167

  Fly   288 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNT 352
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   168 EEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNT 232

  Fly   353 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 417
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   233 KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHP 297

  Fly   418 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLV 482
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   298 VYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLV 362

  Fly   483 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKD 547
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   363 MGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKD 427

  Fly   548 TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSW 612
            ||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
  Fly   428 TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPIASIVVAGAPALNRVSW 492

  Fly   613 TPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDEV 663
            |||||||||||||||||||||||||||||||          ||||||||||
  Fly   493 TPSGLHVCIGDEAGKLYVYDVAENLAQPSRD----------EIKMNQSDEV 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 27/27 (100%)
WD40 316..632 CDD:421866 314/315 (100%)
WD40 repeat 316..365 CDD:293791 48/48 (100%)
WD40 repeat 371..409 CDD:293791 37/37 (100%)
WD40 repeat 418..457 CDD:293791 38/38 (100%)
WD40 repeat 469..555 CDD:293791 85/85 (100%)
WD40 repeat 561..599 CDD:293791 36/37 (97%)
WD40 repeat 607..633 CDD:293791 25/25 (100%)
SdicBNP_001303577.1 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..512 CDD:295369 314/315 (100%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 <224..523 CDD:225201 297/298 (100%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..435 CDD:293791 85/85 (100%)
WD40 repeat 441..479 CDD:293791 36/37 (97%)
WD40 repeat 487..513 CDD:293791 25/25 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439700
Domainoid 1 1.000 911 1.000 Domainoid score I181
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
109.900

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