DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and dyci-1

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001370459.1 Gene:dyci-1 / 177440 WormBaseID:WBGene00015927 Length:643 Species:Caenorhabditis elegans


Alignment Length:688 Identity:253/688 - (36%)
Similarity:376/688 - (54%) Gaps:84/688 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RKAELERKKAKLAALREEKDRRRREKE--IKDMEEAAGRIG---GGAGIDKDQRKDLDEMLSSLG 62
            ||.||||||.|||.|   |.:|:||::  ::::..:....|   .|.........:::::|..:|
 Worm     5 RKLELERKKQKLAEL---KSQRKREEDARVQNLLRSTNENGTTQNGTSRQTLSSNEVEDILRQVG 66

  Fly    63 VAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSGGKKQPLNLSVYNVQATNIPPKETLV 127
            ::....|... |......|.:.|...|.||.....|..|      ::|...:||......|::.:
 Worm    67 ISTEPTVREE-SPAPPPGSHSDNHVDPSASHPRISNLLS------VDLEFSSVQTACTDNKDSAI 124

  Fly   128 YTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWWRPR-------KAHATDYYDEYNLNPGLEWEDE 185
            |:|.|||.......|: .|..|.... |.:|...|.       :||                   
 Worm   125 YSKGTQTDDERISVGE-FSLGSQEFD-YDDDMIMPMDHGQFRGRAH------------------- 168

  Fly   186 FTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE-----VNELSEE 245
             :.|::|.|..  |...:||        |...|.....:|    ::|||.||.     |..||:|
 Worm   169 -SHDQDSPLPY--NEEIAKL--------LGQTKQGDKGLT----RQETEEKKTQTVQIVPPLSDE 218

  Fly   246 QKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEE---ANDERSHARLSLNRVFYD 307
            :|..:.|...|.....|:.:||.|||:|.:||..:|.  .|..|   |:|:..|    |.:|:.|
 Worm   219 EKYRLTLDPEFLDSFNRSCKVISRALNEEIDICINYT--KDPYEKAIASDDLLH----LAQVYQD 277

  Fly   308 ERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMST 372
            |.|:..|.:|.|.:|.|:|:|:..|| ...:.||||.||::|||||.|:.|.|.:.:|||.:.|.
 Worm   278 ETWTAKRLVTGMAFSEHYPDLLAVSY-GPCDIPNEPPGVIVVWNTKSKRMTAEFIVYCQSEIQSV 341

  Fly   373 CFAKFNPNLILGGTYSGQIVLWDNRV-QKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISIS 436
            .||:|:.:|:|.|..||||.:||||: .::.||.|:||:..|||:.|.||.:|||:||||.:|:|
 Worm   342 AFARFHAHLLLAGCESGQICVWDNRLTSRKLPINRSPLTTQAHTYTVSCLAVVGTKNAHNFVSLS 406

  Fly   437 SDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSG 501
            .||::|||::|.|:||.|..||..::.||.:.|.|:||..|:.:.|:|::.|.:.:|||:|....
 Worm   407 RDGRICSWNVDNLTQPVDGKELMTKEGKAASATRMSFPIGEMQTFVVGTDTGEILAASRNGADPA 471

  Fly   502 V---NEVYERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMD 563
            |   :..|:.|.|.:|||..|......||.|||::||.|||:||||.||....:|||.:.|.|:|
 Worm   472 VIKTDVCYKGHSGTLTGIEFHRASGVVDFSHLFISSSHDWTVKLWSTKDANLKFSFESHPDLVLD 536

  Fly   564 VAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPA----LNRVSWTPSGLHVCIGDE 624
            |||||||||:||::|..|.:.:||||:|.|.|.|.: .|||..    :||:.|:|.|.||.:||:
 Worm   537 VAWSPVHPAVFASIDADGNIFVWNLNEDVEGPVARL-RAGAEGESVYMNRLIWSPDGKHVFVGDD 600

  Fly   625 AGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSDE 662
            .|::::|||.|:|.....:||:||...||::|  ||:|
 Worm   601 EGRVHMYDVRESLYVLKSEEWNRFARVLSDMK--QSNE 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 8/27 (30%)
WD40 316..632 CDD:421866 150/323 (46%)
WD40 repeat 316..365 CDD:293791 22/48 (46%)
WD40 repeat 371..409 CDD:293791 18/38 (47%)
WD40 repeat 418..457 CDD:293791 22/38 (58%)
WD40 repeat 469..555 CDD:293791 37/88 (42%)
WD40 repeat 561..599 CDD:293791 23/37 (62%)
WD40 repeat 607..633 CDD:293791 11/25 (44%)
dyci-1NP_001370459.1 WD40 repeat 286..333 CDD:293791 22/47 (47%)
WD40 repeat 339..383 CDD:293791 20/43 (47%)
WD40 382..>611 CDD:421866 108/229 (47%)
WD40 repeat 388..457 CDD:293791 33/68 (49%)
WD40 repeat 487..528 CDD:293791 21/40 (53%)
WD40 repeat 534..573 CDD:293791 23/39 (59%)
WD40 repeat 581..609 CDD:293791 11/27 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156647
Domainoid 1 1.000 371 1.000 Domainoid score I475
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 386 1.000 Inparanoid score I1160
Isobase 1 0.950 - 0 Normalized mean entropy S2725
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - otm14603
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - LDO PTHR12442
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R314
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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