DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and Dync1i2

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001185801.1 Gene:Dync1i2 / 13427 MGIID:107750 Length:655 Species:Mus musculus


Alignment Length:710 Identity:333/710 - (46%)
Similarity:448/710 - (63%) Gaps:121/710 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRKAELERKKAKLAALREEKDRR---RREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGV 63
            |.||||||||.:||.:||||.|:   |::||....:|||..:...:.::| :|::.:.:|.|:|:
Mouse     6 DLKAELERKKQRLAQIREEKKRKEEERKKKETDQKKEAAVSVQEESDLEK-KRREAEALLQSMGL 69

  Fly    64 ---APVSEVLSSLSSVNS---------------MTSDNSNTQTP-DASLQATVNGQSGGK----- 104
               :|:..:||..||.|.               |:..:.:..|| :|..|.:.:|..|.:     
Mouse    70 TTDSPIGFLLSEDSSFNQVDIKLVFSEYWVPPPMSPSSKSVSTPSEAGSQDSGDGAVGSRTLHWD 134

  Fly   105 ---------------KQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSG 154
                           :.|:.|.:..:...:.||:|.:.|||:|||..|.                
Mouse   135 TDPSVLQLHSDSDLGRGPIKLGMAKITQVDFPPREIVTYTKETQTPVTA---------------- 183

  Fly   155 YMEDWWRPRKAHATDYYDEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKD 219
                  :|:                   |||..:|                             |
Mouse   184 ------QPK-------------------EDEEEED-----------------------------D 194

  Fly   220 VAPAITPLEIKKETEVKKE--------VNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVD 276
            ||....|:|.::|..:||:        .:||:||:||.|:.||.|..|...:.|::||||||.::
Mouse   195 VATPKPPVEPEEEKTLKKDEENDSKAPPHELTEEEKQQILHSEEFLSFFDHSTRIVERALSEQIN 259

  Fly   277 IYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPN 341
            |:.||.|....::..:.::.|:|||||.|:||||||:|.::.:|||:.:|||:|.||:||||:|:
Mouse   260 IFFDYSGRDLEDKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPH 324

  Fly   342 EPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQR 406
            |||||.:|||.|:||:|||.||||||||||..||||:|||::||||||||||||||..||||:||
Mouse   325 EPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQR 389

  Fly   407 TPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSM 471
            ||||||||||||||:.:||||||||:||||:|||:|||||||||.|||::||..:||||:|:|||
Mouse   390 TPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 454

  Fly   472 AFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHLFLTSSI 536
            :||..::|:.|:|||:|.||:|.|||.::|::|::|.|.||||||..|....:.||.|||:|||.
Mouse   455 SFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSF 519

  Fly   537 DWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVV 601
            |||:|||:.|:.|||||||||||||.||.|||.||||||.|||.|||||||||.|||||||||.|
Mouse   520 DWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISV 584

  Fly   602 AGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 661
            .|.||||||.||.||..:.:||..|::.:|||.|.:|.|..|||:||...|:||..|::|
Mouse   585 EGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGEQIAVPRNDEWARFGRTLAEINANRAD 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 10/27 (37%)
WD40 316..632 CDD:421866 216/315 (69%)
WD40 repeat 316..365 CDD:293791 30/48 (63%)
WD40 repeat 371..409 CDD:293791 29/37 (78%)
WD40 repeat 418..457 CDD:293791 30/38 (79%)
WD40 repeat 469..555 CDD:293791 48/85 (56%)
WD40 repeat 561..599 CDD:293791 31/37 (84%)
WD40 repeat 607..633 CDD:293791 12/25 (48%)
Dync1i2NP_001185801.1 Dynein_IC2 152..180 CDD:288403 10/27 (37%)
WD40 repeat 299..348 CDD:293791 30/48 (63%)
WD40 346..>616 CDD:225201 188/269 (70%)
WD40 repeat 356..394 CDD:293791 30/37 (81%)
WD40 397..>622 CDD:295369 148/224 (66%)
WD40 repeat 402..443 CDD:293791 31/40 (78%)
WD40 repeat 451..498 CDD:293791 24/46 (52%)
WD40 repeat 506..538 CDD:293791 20/31 (65%)
WD40 repeat 544..582 CDD:293791 31/37 (84%)
WD40 repeat 590..616 CDD:293791 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830618
Domainoid 1 1.000 379 1.000 Domainoid score I846
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 638 1.000 Inparanoid score I823
Isobase 1 0.950 - 0 Normalized mean entropy S2725
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm8761
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - LDO PTHR12442
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R314
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

Return to query results.
Submit another query.