DRSC/TRiP Functional Genomics Resources

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Protein Alignment sw and dnai2b

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_005156459.1 Gene:dnai2b / 101884977 ZFINID:ZDB-GENE-131016-1 Length:604 Species:Danio rerio


Alignment Length:545 Identity:122/545 - (22%)
Similarity:233/545 - (42%) Gaps:83/545 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 VYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWWRPRKAHATDYYDEYNL----------NPGLE 181
            ||||:......        .|:.|.         ||.:.| .|...:.:|          |..::
Zfish     6 VYTKKRSEFGR--------QCNFSD---------RPAELH-VDILPDSSLAANFTVRDPCNVTIQ 52

  Fly   182 WEDEFTDDEESS--LQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSE 244
            ..||.::.|.::  .::...|.      .::..|.|  ||:.|......|:...:|:|:      
Zfish    53 CADEMSEHEVNTERFESESRGI------NHVEGGWP--KDLNPDDMEATIRYRKKVEKD------ 103

  Fly   245 EQKQMIILSENFQRFVVRAGRVIERALSEN--VDIYTDYIGGGDSEEANDERSHARLSLNRVFYD 307
                     |::|..:::...::|..:.:|  .|||.|::...|.|:..:...........||.|
Zfish   104 ---------EHYQNTIMQIAGLMEHCIRQNNATDIYEDFLEDEDEEDVEESEEQPSAKTINVFRD 159

  Fly   308 ERWSKNRCITSMDWSTHFPELVVGSYHNNE--ESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVM 370
            ....| |..||:.|.......:..:|.:.|  .:||:.:....:|:.: ..:.||...   ..|.
Zfish   160 PNEVK-RTATSLSWHPDGNHKLAVAYSSLEFQRAPNDMNFDSYIWDIE-NPNKPEMTL---KPVC 219

  Fly   371 STCFAKFNP---NLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNV 432
            .....::||   ::::||:|:|||..||.| :...|::.:|:. .:|..|||....:.::...::
Zfish   220 PLVCLEYNPKDSHILIGGSYNGQIAYWDTR-KGSQPVEMSPIE-FSHRDPVYKAIWLQSKTGTDI 282

  Fly   433 ISISSDGKLCSWSLDMLSQPQDTLELQQRQ----SKAIAITSMAFPANEINSLVMGSEDGYVYSA 493
            .|.|:||::..|.:..:|:|.:.|.:...:    ..::...|:.|........::|:|.|.|.|.
Zfish   283 FSASTDGQVLWWDIRKMSEPTERLVMDPTKKGNIDNSLGAISLEFETTMPTKFMVGTEQGLVVSC 347

  Fly   494 SRHGLRSGVNEV--YERHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWS--LKDTKPLYSF 554
            :|.........|  |..|.||:..:     |.:|.|...|||.. |||.::||  :|::..::: 
Zfish   348 NRKAKTPAEKIVCTYSGHHGPVYAL-----QRNPFFPKNFLTVG-DWTARIWSEDIKESSIMWT- 405

  Fly   555 EDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHV 619
            :.:..:::|..||||.|::|..|...|.||:|::......||..:.|.. .||..:....:|..:
Zfish   406 KYHIAHLLDGCWSPVRPSVFFTVKMDGTLDVWDILFKQNDPTLCLKVCD-EALYSIKVQDNGRFL 469

  Fly   620 CIGDEAGKLYVYDVAENLAQPSRDE 644
            ..|.:.|...:.:::..|....::|
Zfish   470 ACGSQLGTTTLLEISSGLCSLQKNE 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 4/7 (57%)
WD40 316..632 CDD:421866 81/328 (25%)
WD40 repeat 316..365 CDD:293791 10/50 (20%)
WD40 repeat 371..409 CDD:293791 12/40 (30%)
WD40 repeat 418..457 CDD:293791 9/38 (24%)
WD40 repeat 469..555 CDD:293791 25/89 (28%)
WD40 repeat 561..599 CDD:293791 14/37 (38%)
WD40 repeat 607..633 CDD:293791 4/25 (16%)
dnai2bXP_005156459.1 WD40 <168..495 CDD:225201 83/341 (24%)
WD40 repeat 169..215 CDD:293791 9/46 (20%)
WD40 repeat 221..260 CDD:293791 12/39 (31%)
WD40 223..477 CDD:295369 69/263 (26%)
WD40 repeat 268..296 CDD:293791 7/27 (26%)
WD40 repeat 318..354 CDD:293791 8/35 (23%)
WD40 repeat 369..409 CDD:293791 12/46 (26%)
GBP_C <489..588 CDD:303769 1/6 (17%)
coiled coil 567..578 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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