DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and dnai3

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_017209145.2 Gene:dnai3 / 100333131 ZFINID:ZDB-GENE-121116-5 Length:968 Species:Danio rerio


Alignment Length:858 Identity:170/858 - (19%)
Similarity:278/858 - (32%) Gaps:302/858 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ERKKAKLAALREEKDRRRREKEIKDMEEAAGRIGGGAGIDKDQRKDLDEMLSSLGVAPVSEVLSS 72
            :|.|:|.|..::.||:...:...|..|.||...|.            .|.:..|.:..||:.|..
Zfish     7 KRPKSKEANKKKTKDKSNADNLPKPEEAAASEPGH------------PEYIFPLVLTSVSQELFG 59

  Fly    73 LSSVNSMTSDNSNTQ------TPDASLQATVNGQSGGKKQPLNLS-------------------- 111
            ..:...:|::|.:..      ..|...:|.|...|..|:..|:..                    
Zfish    60 CRADEDVTAENPHKLLKKQDIIQDLRHRAAVCDFSPVKQAVLDYPEDELLLVFDRDFIYGQSFYL 124

  Fly   112 VYNVQATNI---PP----------------------------------KETLVYTKQTQTTSTGG 139
            |..|||...   ||                                  .|.||||.....:|   
Zfish   125 VLTVQAKESILKPPAEGADEQMEDEEQQEEEEEMMTKTPEPQPWVSLGSERLVYTPSAVLSS--- 186

  Fly   140 GNGDVLSC------HSSPLSGYMEDWWRPRKAHATDYYDEYNLNPGLEWEDEFT-----DDEESS 193
                 :.|      ...||.         |::.....:.:.|   .|:|::|..     :|:..|
Zfish   187 -----VICVRQLRYSVCPLG---------RRSGTRVRFSDRN---ALDWKEELVECSSYEDKSFS 234

  Fly   194 LQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEV--KKEVNELSEEQKQMIILSENF 256
            :..:....:::           |.:|.....|....||...:  :.|..|.|.|:||..:.|||.
Zfish   235 ITRMERDSSTQ-----------TCRDNTHTCTQTLWKKPKNMWSQYEPREFSSEEKQHQLQSENL 288

  Fly   257 QRFVVRAGRVIERALSENV--DIY-TDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITS 318
            :.|:....|..|..|.:|:  |:: .|:....:.:.:...::..:|...:.|.|..:||.:.|:.
Zfish   289 KNFITSVARRFEIYLQQNLIADVFCDDWTALCEDDASLMGKTETQLKEYQSFMDLHFSKEKTISH 353

  Fly   319 MDWSTHFPELVVGSYHNN---EE----------SPNEPDGVVMVW------NTKFKKSTPEDVFH 364
            :.|......::|.|....   ||          :|:.    ::.|      |.:.:...|:||. 
Zfish   354 VQWHPSISGVIVVSMMERLSLEERIDSSTKLLLNPSH----ILFWSFSDPINPQLQLECPDDVL- 413

  Fly   365 CQSAVMSTCFAKFNP---NLILGGTYSGQIVLWD-------------------NRVQK--RTPIQ 405
                    || :|:|   |:|.||..:||:||||                   |::.|  .||:.
Zfish   414 --------CF-QFSPSDHNIIAGGCMNGQVVLWDISAHVDRLQDTRSGGKNILNKLGKSDATPVV 469

  Fly   406 RTPLSAAAHTHPVYCLQMVGTQNAH-------------------------------NVISISSDG 439
            |            || .:.|.:|.|                               .:::.:.|.
Zfish   470 R------------YC-AVSGIENGHKAPITDIQWLPETFEVNKLGTPVENQSRTSVQLVTCAPDC 521

  Fly   440 KLCSW----------SLDMLSQPQDTLELQQRQSKAIAITSMAF---PANEINSLVMGSEDGYVY 491
            .:..|          ||..:.|.|:...|:.........|.:..   |...: ||...|..| .|
Zfish   522 CVLFWDLRAPRVMVHSLTDIKQKQEEKPLENPHGVPNTFTHLNLTWKPFIRV-SLPKISSSG-EY 584

  Fly   492 SASRHGLR-------------SGV-NEVY-------ERHLGPITGISTHYNQLSPDFGHLFLTSS 535
            |..|..:|             ||. :.|:       .:...|:..|||.. .::.:.|.|..|  
Zfish   585 SPLRFSMRENTVDYNTGDKSVSGADSRVFAQLRMQSAKQQKPLQNISTKL-YIATEDGELVYT-- 646

  Fly   536 IDWTIKLWSLKD--------TKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLNQD- 591
             ||.::    ||        .|||..|......:..|:.||....:...| |.....:|..... 
Zfish   647 -DWKVE----KDNDSGRMLSAKPLDVFLLQDTLLHTVSRSPFFRDIILTV-GRFSFSIWREGLTC 705

  Fly   592 ----TEVPTASIVVAGAPALNRVSWTPSGLHVC-IGDEAGKLYVYDVAENLAQPS---------- 641
                ..|.:.|:..||       .|:.|...|. :|.|.|.:.|:|:.:|..|||          
Zfish   706 GPLLMSVYSKSMFSAG-------HWSRSRPAVLFMGREDGDVEVWDLLQNSRQPSHTQNISTAAI 763

  Fly   642 ---RDEWSRFNTH 651
               |.:.|..|||
Zfish   764 SCIRTQTSSGNTH 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 12/84 (14%)
WD40 316..632 CDD:421866 88/437 (20%)
WD40 repeat 316..365 CDD:293791 12/67 (18%)
WD40 repeat 371..409 CDD:293791 19/61 (31%)
WD40 repeat 418..457 CDD:293791 11/79 (14%)
WD40 repeat 469..555 CDD:293791 27/117 (23%)
WD40 repeat 561..599 CDD:293791 7/42 (17%)
WD40 repeat 607..633 CDD:293791 7/26 (27%)
dnai3XP_017209145.2 WD40 <348..>533 CDD:225201 38/211 (18%)
SbcC <835..>953 CDD:223496
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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