DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sw and dync1i1

DIOPT Version :9

Sequence 1:NP_477075.2 Gene:sw / 44160 FlyBaseID:FBgn0003654 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001106382.1 Gene:dync1i1 / 100127187 XenbaseID:XB-GENE-490874 Length:627 Species:Xenopus tropicalis


Alignment Length:686 Identity:319/686 - (46%)
Similarity:432/686 - (62%) Gaps:100/686 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DRKAELERKKAKLAALREEKDRRRREKEIKDMEE--AAGRIGGGAGIDKDQRKDLDEMLSSLGVA 64
            |.||||||||.:||.:||||.|:..|::.|:.|:  .|..|...:.:|: :|::.:.:|.|:|::
 Frog     6 DLKAELERKKQRLAQIREEKKRKEEERKKKEAEQQHKAEPIAEDSDLDR-KRRETEALLQSIGIS 69

  Fly    65 PVSEVLSSLSSVNSMTSDNSNTQTP-DASLQATVNGQSGGK--------------------KQPL 108
            |...::.:     .|:..:.:..|| :|..|.:|.|...|:                    ::.:
 Frog    70 PEPPLVPT-----PMSPSSKSLSTPSEAGSQDSVEGTLMGRTLQWDTDPSVLQLHSDSELGRRLI 129

  Fly   109 NLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLSCHSSPLSGYMEDWWRPRKAHAT--DYY 171
            .|.|..|...:..|:|.:.|:|:|||                           |...|.|  :..
 Frog   130 KLGVSKVTQVDFLPREVVSYSKETQT---------------------------PVTTHQTEEEEE 167

  Fly   172 DEYNLNPGLEWEDEFTDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVK 236
            ||..::...|.:.||.:.||..       .:.::||                             
 Frog   168 DEEMVDLKTEHDSEFENQEEKQ-------DSREVPP----------------------------- 196

  Fly   237 KEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSL 301
               .||:||:||.:..||.|..|..|..|||||||:|:.:|:.||.|....::..|.::.|.||.
 Frog   197 ---RELTEEEKQQVTHSEEFLIFFDRTIRVIERALAEDSNIFFDYSGRDLEDKEGDIQAGANLSF 258

  Fly   302 NRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQ 366
            ||.||||.|||:|.:|.:|||..:|||:|.||:|||::|:|||||.:|||.||:|:|||.:||||
 Frog   259 NRQFYDEHWSKHRVVTCLDWSLQYPELMVASYNNNEDAPHEPDGVALVWNMKFRKTTPEYIFHCQ 323

  Fly   367 SAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHN 431
            |:|||.|||:|:|||::||||||||||||||..:|||:|||||||||||||:||:.:||||||||
 Frog   324 SSVMSVCFARFHPNLVIGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPIYCVNVVGTQNAHN 388

  Fly   432 VISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRH 496
            :|::|:|||||||||||||.||:::||...:||.:|:|.||||..::|:.|:|||:|.||:|.||
 Frog   389 LITVSTDGKLCSWSLDMLSAPQESMELVYNKSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRH 453

  Fly   497 GLRSGVNEVYERHLGPITGISTHYNQLSP-DFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDY 560
            |.::|::||:|.|.||:|||:.| |.:.| ||.|||||||.|||:|||:.|..|||||||||:||
 Frog   454 GSKAGISEVFEGHQGPVTGINCH-NAVGPIDFSHLFLTSSFDWTVKLWTTKHNKPLYSFEDNADY 517

  Fly   561 VMDVAWSPVHPALFAAVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEA 625
            |.||.||||||||||.|||.|||||||||.||||||||..|.||.|||||.|..||..|.:||..
 Frog   518 VCDVTWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASTAVEGASALNRVRWAQSGKEVAVGDSE 582

  Fly   626 GKLYVYDVAENLAQPSRDEWSRFNTHLSEIKMNQSD 661
            |::::|||.| .:.|..||||||...|.||:.|:.:
 Frog   583 GRVWIYDVGE-FSIPHNDEWSRFARTLMEIRANRGE 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swNP_477075.2 Dynein_IC2 107..135 CDD:402922 9/27 (33%)
WD40 316..632 CDD:421866 210/316 (66%)
WD40 repeat 316..365 CDD:293791 29/48 (60%)
WD40 repeat 371..409 CDD:293791 28/37 (76%)
WD40 repeat 418..457 CDD:293791 27/38 (71%)
WD40 repeat 469..555 CDD:293791 51/86 (59%)
WD40 repeat 561..599 CDD:293791 32/37 (86%)
WD40 repeat 607..633 CDD:293791 12/25 (48%)
dync1i1NP_001106382.1 Dynein_IC2 129..156 CDD:288403 10/53 (19%)
WD40 180..598 CDD:225201 258/458 (56%)
BALF1 <221..>276 CDD:115513 27/54 (50%)
WD40 266..589 CDD:295369 214/323 (66%)
WD40 repeat 274..319 CDD:293791 28/44 (64%)
WD40 repeat 329..368 CDD:293791 29/38 (76%)
WD40 repeat 376..419 CDD:293791 29/42 (69%)
WD40 repeat 425..464 CDD:293791 20/38 (53%)
WD40 repeat 480..512 CDD:293791 22/31 (71%)
WD40 repeat 518..556 CDD:293791 32/37 (86%)
WD40 repeat 564..590 CDD:293791 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 376 1.000 Domainoid score I857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 613 1.000 Inparanoid score I890
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9426
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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