DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10939 and Nherf4

DIOPT Version :10

Sequence 1:NP_524712.1 Gene:CG10939 / 44155 FlyBaseID:FBgn0010620 Length:296 Species:Drosophila melanogaster
Sequence 2:NP_001178925.1 Gene:Nherf4 / 500986 RGDID:1559807 Length:498 Species:Rattus norvegicus


Alignment Length:221 Identity:58/221 - (26%)
Similarity:95/221 - (42%) Gaps:52/221 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PGVTKTCHIVKRPDFDGYGFNLHSEK---VKPGQFIGKVDADSPAEAAGLKEGDRILEVNGVSIG 78
            |...:..:|.|.|  .|:||.|..||   .:.|||:.:||...||:.||:|.|||::.|.|.|:.
  Rat   258 PAKPRCLNIEKGP--QGFGFLLREEKGPDGRLGQFLWEVDPGLPADKAGMKAGDRLVAVAGESMD 320

  Fly    79 SETHKQVVARIKAIANEVRLLLIDVDG----KALEVKP---------ASPPAAACNG---NGSAS 127
            ...|::.|:||:|..:.|.|:::|.:.    ..:.:.|         |:.|.|....   ..:..
  Rat   321 GLGHEETVSRIRAQGSCVSLVVVDPEADRFFSMVRLSPLLFLENTEIAAAPLAETKDLPVEDTVE 385

  Fly   128 QNGYEGTKQ----EMPG----------ASANISSISMVSTKRSSNASSIQSGSTM---------N 169
            .:|..|::|    ..||          ||.....||.|:...|:..:.:|.|..:         .
  Rat   386 PSGLAGSRQCFLYPGPGGGYGFRLRCVASGPCLFISQVTPGGSAARAGLQMGDAILEVNGCPVGG 450

  Fly   170 ASDLDVVDRGIPAVAAPVAITPPPVQ 195
            .||||.:.:        :|...||::
  Rat   451 DSDLDTLQQ--------LAEAEPPLR 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10939NP_524712.1 PDZ_NHERF-like 21..102 CDD:467249 32/83 (39%)
Nherf4NP_001178925.1 PDZ_NHERF-like 48..127 CDD:467249
PDZ_NHERF-like 156..233 CDD:467249
PDZ_NHERF-like 262..344 CDD:467249 32/83 (39%)
PDZ <414..475 CDD:214570 14/63 (22%)
Blue background indicates that the domain is not in the aligned region.

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