DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10939 and Patj

DIOPT Version :9

Sequence 1:NP_524712.1 Gene:CG10939 / 44155 FlyBaseID:FBgn0010620 Length:296 Species:Drosophila melanogaster
Sequence 2:XP_038965114.1 Gene:Patj / 140581 RGDID:1565362 Length:1858 Species:Rattus norvegicus


Alignment Length:315 Identity:65/315 - (20%)
Similarity:108/315 - (34%) Gaps:102/315 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 STPTSPKTPTPPTLPPGVTK----------------------TCHIVK-RPDFDGYGFNL--HSE 41
            :.|...|.|.|...|...|:                      ..||:: ..|.:|.|.:|  :.:
  Rat  1202 TAPPPMKLPPPYRAPSADTEESEEDSALTDKKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKD 1266

  Fly    42 KVKPGQFIGKVDADSPAEAAG-LKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLLI---- 101
            :.:...|:..::.|.||.|.| ::.||.:||:|...:...:|:...|.||.....|:|:.|    
  Rat  1267 RSRMSIFVVGINPDGPAAADGRMRVGDELLEINNQILYGRSHQNASAIIKTAPTRVKLVFIRNED 1331

  Fly   102 -----------------------------------DVDGKALEVKPASPPAAACNG--------N 123
                                               .||.|.|..:.:|.|......        .
  Rat  1332 AVNQMAVAPFPVPSHSPSPVEDLGGTEPVSSEEDSSVDAKPLPERESSKPEDLTQAVDDSMVAEQ 1396

  Fly   124 GSASQNGYEGTKQ-EMPGASANISSISM------VSTKRSSNASSIQSGSTMNASDLDVVDRGIP 181
            ..||::.....:| :.||.||.:||.|.      ....:|::|....||:......:|       
  Rat  1397 EKASESPDSAARQMKQPGYSAQVSSSSQEIPSAPAPLCQSTHADVTGSGNFQAPLSVD------- 1454

  Fly   182 AVAAPVAITPP--PVQNG-------SKPSSPINNNTL--MSTPPPPSA--TKAGI 223
              .||:::.|.  |:..|       ||..|.:..:.:  ..||.|..:  ||.|:
  Rat  1455 --PAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLPGGSLPTKVGV 1507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10939NP_524712.1 PDZ_signaling 20..101 CDD:238492 24/106 (23%)
PatjXP_038965114.1 L27_2 8..65 CDD:312549
PDZ_signaling 135..218 CDD:238492
PDZ_signaling 248..325 CDD:238492
PDZ_signaling 366..450 CDD:238492
CtpA <391..>511 CDD:223864
PDZ_signaling 572..636 CDD:238492
PDZ 684..773 CDD:214570
PDZ_signaling 1074..1165 CDD:238492
PDZ 1244..1329 CDD:214570 24/84 (29%)
PDZ 1471..1578 CDD:214570 9/37 (24%)
PDZ_signaling 1590..1670 CDD:238492
PDZ_signaling 1731..1816 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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