DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hmgs and HMGS

DIOPT Version :9

Sequence 1:NP_001286488.1 Gene:Hmgs / 44154 FlyBaseID:FBgn0010611 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_192919.1 Gene:HMGS / 826788 AraportID:AT4G11820 Length:461 Species:Arabidopsis thaliana


Alignment Length:466 Identity:229/466 - (49%)
Similarity:311/466 - (66%) Gaps:17/466 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGFCSDREDVNSLCLTVVSRLLER 71
            :||||.|::|.||...|.|..||..||||.|||||||||..:.||::.|||.|:....|:.|.|:
plant     3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLFEK 67

  Fly    72 QHVKHSEIGRLEVGTETIVDKSKSVKSVLMQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVE 136
            ..:..::|||||||:||::|||||:|:.|||||.:.||||:||:|:|||||||||||.|.|||||
plant    68 YKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVE 132

  Fly   137 SSSWDGRLALAVCADIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPDL 201
            |:|||||..|.:|.|.||||:|.|||||||.|:|||:||:||::.:..|||:||.|.||||||:|
plant   133 SNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLRASHMAHVYDFYKPNL 197

  Fly   202 SSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFDAILFHTPFCKLVQKSV 266
            :||||.||||||..|||.|||:||:....||   :|...|: .|::..|.|:||:|:.||||||.
plant   198 ASEYPVVDGKLSQTCYLMALDSCYKHLCNKF---EKIEGKE-FSINDADYIVFHSPYNKLVQKSF 258

  Fly   267 GRLSFNDFL--LSSEEERTKQFPDLERFNTATLESTYFDRDVEKAFMTQSANIFASKTKKSLLLA 329
            .||.:||||  .||.:|..|:  ....:::.||:.:|..||:||.....:...:.:|.:.:.|:.
plant   259 ARLLYNDFLRNASSIDEAAKE--KFTPYSSLTLDESYQSRDLEKVSQQIAKPFYDAKVQPTTLIP 321

  Fly   330 NQVGNMYTPSVYSGLVSLLISGPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAF--EKFVSQ 392
            .:||||||.|:|:...| ||.....:|.|||:.:||||||..|:|:|:.:..:...|  ....|.
plant   322 KEVGNMYTASLYAAFAS-LIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASV 385

  Fly   393 LDYVQPLLNSREKVAPEQFSALMEVREKNNHAAPYTPT--GSISALFPGTYYLKDVDALHRRTYE 455
            :| |...|.:|.:.|||:|...|::.|....|..:..|  |.|..|.|||||||:||:|:||.|.
plant   386 MD-VGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYG 449

  Fly   456 R---TPTISNG 463
            :   ..:::||
plant   450 KKGEDGSVANG 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgsNP_001286488.1 HMG-CoA-S_euk 5..456 CDD:273826 227/454 (50%)
cond_enzymes 8..178 CDD:299129 105/169 (62%)
HMG_CoA_synt_C 179..456 CDD:285711 120/282 (43%)
HMGSNP_192919.1 PLN02577 1..461 CDD:178189 229/466 (49%)
cond_enzymes 4..174 CDD:299129 105/169 (62%)
HMG_CoA_synt_C 175..451 CDD:285711 120/283 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 227 1.000 Domainoid score I669
eggNOG 1 0.900 - - E1_COG3425
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1609
Inparanoid 1 1.050 426 1.000 Inparanoid score I428
OMA 1 1.010 - - QHG61358
OrthoDB 1 1.010 - - D495111at2759
OrthoFinder 1 1.000 - - FOG0003410
OrthoInspector 1 1.000 - - oto3737
orthoMCL 1 0.900 - - OOG6_101064
Panther 1 1.100 - - LDO PTHR43323
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2306
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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