DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mkrn1 and cps3

DIOPT Version :9

Sequence 1:NP_001246867.1 Gene:Mkrn1 / 44131 FlyBaseID:FBgn0029152 Length:386 Species:Drosophila melanogaster
Sequence 2:NP_594201.1 Gene:cps3 / 2543054 PomBaseID:SPAC3A11.02 Length:583 Species:Schizosaccharomyces pombe


Alignment Length:79 Identity:27/79 - (34%)
Similarity:39/79 - (49%) Gaps:17/79 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TAISG--------MALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPECEEQVATDVLPKPSTS 65
            |..||        :.|...:|||:|:.:|.|:||..|...|.|..||     :|.|... .|||:
pombe    48 TCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEHVLPDGR-----KVKTRAF-APSTT 106

  Fly    66 SSSTIGSRSASISS 79
            :   :||.|.:||:
pombe   107 A---MGSSSQNISA 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mkrn1NP_001246867.1 ZnF_C3H1 20..43 CDD:214632 10/22 (45%)
RING 213..267 CDD:238093
cps3NP_594201.1 ZnF_C3H1 37..61 CDD:214632 3/12 (25%)
ZnF_C3H1 66..90 CDD:214632 10/23 (43%)
YTH1 258..566 CDD:227416
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1039
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11224
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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