DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmgB and Trank1

DIOPT Version :10

Sequence 1:NP_001097124.1 Gene:lmgB / 44128 FlyBaseID:FBgn0085470 Length:365 Species:Drosophila melanogaster
Sequence 2:XP_006512223.1 Gene:Trank1 / 320429 MGIID:1341834 Length:3009 Species:Mus musculus


Alignment Length:106 Identity:27/106 - (25%)
Similarity:37/106 - (34%) Gaps:23/106 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PLPKS------LSAATAAPVAIGPHPRTASPASSVNALTVAAGELYLGPSTSSSAASRNRSYNGH 76
            |.|:|      |||..|.|...||.||..           |..:..||...:.|:.:..|.....
Mouse    21 PTPRSRAPGAKLSAPEAGPPRRGPLPRGG-----------AGRDTLLGAKATPSSPAARRYVTAL 74

  Fly    77 GHSQRHGSLSSTQESL------SDRESVHSRASSTHSAGAV 111
            |..|..||..|...:|      ..||:....|.::....:|
Mouse    75 GPPQPRGSTDSACAALPQPVPHEPREAAFRLAPASERGASV 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmgBNP_001097124.1 None
Trank1XP_006512223.1 PHA03381 <22..>136 CDD:177618 26/105 (25%)
Spy <134..>217 CDD:443119
TPR repeat 144..172 CDD:276809
TPR repeat 177..207 CDD:276809
UvrD_C <205..>341 CDD:433145
ANKYR <322..447 CDD:440430
ANK repeat 379..417 CDD:293786
ANKYR <529..685 CDD:440430
ANK repeat 552..579 CDD:293786
ANK repeat 582..629 CDD:293786
ANK repeat 631..666 CDD:293786
HelD <1477..1673 CDD:443173
Spy 1988..>2145 CDD:443119
Blue background indicates that the domain is not in the aligned region.

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