DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstA-R1 and Rgr

DIOPT Version :9

Sequence 1:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster
Sequence 2:XP_038950404.1 Gene:Rgr / 306307 RGDID:1309174 Length:300 Species:Rattus norvegicus


Alignment Length:305 Identity:68/305 - (22%)
Similarity:113/305 - (37%) Gaps:79/305 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 GII----GFAGLLGNGLVILVVVANQQMRSTTNLLIINLAVSDI---LFVIFCVPFTATDYVLP- 138
            ||:    ..:|:..|||.|........:|:.:|||:::||::|.   |..:.....:....:|| 
  Rat    20 GIVLLMEALSGISLNGLTIFSFCKTPDLRTPSNLLVLSLALADTGISLNALVAAVSSLLRVILPI 84

  Fly   139 ----EWPFGNVWCKFVQYMIVVTCHCSVYTLVLMSFDRFLAVVHPVTSMSLRTERNATLAIMCAW 199
                .||.|:..|:...:....|...|:.....:::.|:   .|..|...|            ||
  Rat    85 VSHRRWPHGSEGCRVHGFQGFATALASICGSAAIAWGRY---HHYCTRRQL------------AW 134

  Fly   200 ITIVTTAIPVAL-----------------SHSVRIYQYHGNAGTACVFSTEEEIWSLVGFQVSFF 247
                .||||:.|                 .|    |.|. ..||.|.........:.:.|..:..
  Rat   135 ----DTAIPLVLFVWLSSAFWASLPLMGWGH----YDYE-PVGTCCTLDYSRGDRNFISFLFTMA 190

  Fly   248 LSSYVAPLTLICFLYMGMLARLWKSAPGCKPSAESRKGKRRVT-----RMVVVVVLAFAICWLPI 307
            ..:::.||.:....|..|..:|            ||.|..:|.     ||::       :.|.| 
  Rat   191 FFNFLVPLFITHTSYRFMEQKL------------SRSGHLQVNTTLPGRMLL-------LGWGP- 235

  Fly   308 HVILVLKALNLYGGSHLSVIIQIISHVVAYTNSCINPILYAFLSD 352
            :.:|.|.|. :...|.:|..:|::..::|.|...||.|.||..|:
  Rat   236 YALLYLYAA-VADVSFISPKLQMVPALIAKTMPTINAINYALRSE 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstA-R1NP_524700.1 7tm_4 83..>240 CDD:304433 39/185 (21%)
7tm_1 91..347 CDD:278431 62/285 (22%)
RgrXP_038950404.1 7tmA_Retinal_GPR 17..286 CDD:320200 68/305 (22%)
TM helix 1 19..43 CDD:320200 7/22 (32%)
TM helix 2 52..74 CDD:320200 7/21 (33%)
TM helix 3 98..120 CDD:320200 2/21 (10%)
TM helix 4 139..155 CDD:320200 2/15 (13%)
TM helix 5 183..206 CDD:320200 3/22 (14%)
TM helix 6 219..241 CDD:320200 6/29 (21%)
TM helix 7 253..278 CDD:320200 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340932
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.