DRSC/TRiP Functional Genomics Resources

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Protein Alignment AstA-R1 and srx-60

DIOPT Version :9

Sequence 1:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_504895.2 Gene:srx-60 / 187858 WormBaseID:WBGene00005951 Length:300 Species:Caenorhabditis elegans


Alignment Length:188 Identity:39/188 - (20%)
Similarity:73/188 - (38%) Gaps:30/188 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 IGFAGLLGNGLVILVVVANQQMRSTTNLLIINLAVSD----ILFVIFCVPFTATDYVLPEWPFGN 144
            |.|.|.:.|..:::.:.....:.::...|..|.|:.|    ::|:::..|....|..:.:     
 Worm    14 ITFIGSVLNFSILIAIYKLPALNNSFGYLTANQAIVDALHSVIFLLYFCPMVILDQPIMK----- 73

  Fly   145 VWCKFVQYMIVVTC------HCSVYTLVLMSFDRFLAVVHPVTSMSLRTERNATLAIMCAWITIV 203
                  .|..:|.|      ..||.|..|:|.:||.||..|:......:.:|.:..|:..||..|
 Worm    74 ------SYSFIVGCFLLFCYELSVLTHFLISINRFCAVWVPLKYEKWFSRKNTSSIIILLWIFEV 132

  Fly   204 TTAIPV--ALSHSVRIYQYHGNAGTACVFSTEEEIWSLVGFQVSFFLSSYVAPLTLIC 259
            ..||..  .|.|...:.:.|      .:..|..:....|.:...|..:|.:..: ::|
 Worm   133 ALAIVFYQILCHVAYLEEIH------FIQFTNTKFCGFVAWYDDFVKNSVIIAI-VVC 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstA-R1NP_524700.1 7tm_4 83..>240 CDD:304433 35/167 (21%)
7tm_1 91..347 CDD:278431 36/181 (20%)
srx-60NP_504895.2 TM helix 1 8..31 CDD:381740 4/16 (25%)
7TM_GPCR_Srx 12..266 CDD:370981 39/188 (21%)
TM helix 2 40..62 CDD:381740 5/21 (24%)
TM helix 3 77..99 CDD:381740 6/21 (29%)
TM helix 4 122..147 CDD:381740 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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