DRSC/TRiP Functional Genomics Resources

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Protein Alignment AstA-R1 and srx-56

DIOPT Version :9

Sequence 1:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_504885.2 Gene:srx-56 / 182168 WormBaseID:WBGene00005947 Length:298 Species:Caenorhabditis elegans


Alignment Length:309 Identity:68/309 - (22%)
Similarity:107/309 - (34%) Gaps:79/309 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 AESVALERIVSTI---------------VPVF---FGIIGFAGLLGNGLVILVVVANQ----QMR 106
            |:.|||..:..||               :|||   |||:.               |||    .:.
 Worm     4 AKEVALVLLPVTIFGSILNWSVFYSFCKLPVFKNAFGILS---------------ANQAFADALH 53

  Fly   107 STTNLLIINLAVSDILFVIFCVPFTATDYVLPEWPFGNVWCKFVQYMIVVTCHCSVYTLVLMSFD 171
            |||.||            .||.........:.::   :..|.|   .|:.....|:.|..::|.:
 Worm    54 STTFLL------------YFCPMVLFDQSTMKQY---SHHCGF---FILFLSEFSILTHFIISIN 100

  Fly   172 RFLAVVHPVTSMSLRTERNATLAIMCAWITIVTTAIPVALSHSVRIYQYHGNAGTACVFSTEEEI 236
            |..||..|....:|.:.||..:.....||.|...||   |.:....|.|:.:|....|| |..|.
 Worm   101 RAFAVWAPYRYETLFSVRNTKILKFIVWIFISFVAI---LFYEKFCYIYYDSASRFFVF-TATEF 161

  Fly   237 WSLVGFQVSFFLSSYV----APLTLICFLYMGMLARLWKSAPGCKPSAESRKGKR--RVTRMVVV 295
            ..::.:...|..::.:    ..|.:|..|.:..:.:  |.:......|::....|  |..:..|.
 Worm   162 CGVIAWYGDFLKNAAIVIATVSLDIITVLRVRHITK--KISGAMSEEAQNNISARDIRFLKQAVA 224

  Fly   296 VVLAFAICWLPIHVILVLKALN----LYGGSHLSV-------IIQIISH 333
            ....| :|.|..:....|...|    .:|.|...|       ||.::.|
 Worm   225 QATVF-LCELTTYFFFPLYFENYWILFFGTSFAWVGIHAADGIIVVVCH 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstA-R1NP_524700.1 7tm_4 83..>240 CDD:304433 37/160 (23%)
7tm_1 91..347 CDD:278431 56/264 (21%)
srx-56NP_504885.2 TM helix 1 8..32 CDD:341315 4/23 (17%)
7TM_GPCR_Srx 13..272 CDD:370981 63/298 (21%)
TM helix 2 39..69 CDD:341315 13/56 (23%)
TM helix 3 79..106 CDD:341315 8/29 (28%)
TM helix 4 119..137 CDD:341315 6/20 (30%)
TM helix 5 162..187 CDD:341315 2/24 (8%)
TM helix 6 213..248 CDD:341315 8/35 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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