DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstA-R1 and ccr3

DIOPT Version :10

Sequence 1:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster
Sequence 2:NP_001107334.1 Gene:ccr3 / 100135154 XenbaseID:XB-GENE-5897823 Length:345 Species:Xenopus tropicalis


Alignment Length:324 Identity:93/324 - (28%)
Similarity:161/324 - (49%) Gaps:41/324 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 HNANDSMEYDAESVALERIV------------STIVPVFFGIIGFAGLLGNGLVILVVVANQQMR 106
            |.:|.:|.:...:...|.||            :..||.|:..:....||||||::.:::..::::
 Frog     9 HLSNSTMGFSTTTYEDETIVYMCSNDESIKFGAAAVPFFYYTVFTLSLLGNGLILFLLLKYEKIK 73

  Fly   107 STTNLLIINLAVSDILFVIFCVPFTATDYVLPEWPFGNVWCKFVQYMIVVTCHCSVYTLVLMSFD 171
            :.|||.|:||.:||:||.| .:||.|. |...||.|||..||.|..:..:.....:..|.:|:.|
 Frog    74 TVTNLFILNLVISDLLFTI-TLPFWAF-YHSNEWVFGNGMCKVVSSVFFIGFFSCILFLTVMTMD 136

  Fly   172 RFLAVVHPVTSMSLRTERNATLAIMCAWITIVTTAIPVALSHSVRIYQYHGNAGTACV---FSTE 233
            |:|||||.|::...|......:|.:..|:....:.:|..:.:..|   .|.:||..|.   ||.:
 Frog   137 RYLAVVHAVSAARTRKLIYVYVASIAIWVISFVSTVPKFVLYGTR---KHDSAGILCEETGFSAD 198

  Fly   234 E-EIWSLVGF--QVSFFLSSYVAPLTLICFLYMGMLARLWKSAPGCKPSAESRKGKRRVTRMVVV 295
            : :.|..:|:  |::.|   ::.||.:|.:.|..::.:|:.:         ....|.:..:::.|
 Frog   199 KIDTWRRLGYYQQLTMF---FLFPLIVILYCYTLIVVKLFNT---------KMHNKDKAVKLISV 251

  Fly   296 VVLAFAICWLPIHVILVLKALNLYGGSHLSVIIQ---IISHVVAYTNSCINPILYAFLSDNFRK 356
            :||||.|||.|.:|::.|:   |..|...:..:.   .|...:||.:.||||..|.|:...||:
 Frog   252 IVLAFFICWTPYNVVIFLR---LSPGDPCNDYLNNAFYICRNIAYFHCCINPFFYTFVGTKFRR 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstA-R1NP_524700.1 7tmA_AstA_R_insect 75..358 CDD:320224 87/291 (30%)
TM helix 1 76..102 CDD:320224 9/25 (36%)
TM helix 2 109..135 CDD:320224 14/25 (56%)
TM helix 3 147..177 CDD:320224 9/29 (31%)
TM helix 4 189..209 CDD:320224 2/19 (11%)
TM helix 5 239..268 CDD:320224 7/30 (23%)
TM helix 6 284..314 CDD:320224 11/29 (38%)
TM helix 7 326..351 CDD:320224 9/27 (33%)
ccr3NP_001107334.1 7tmA_XCR1 42..314 CDD:341337 87/291 (30%)
TM helix 1 42..69 CDD:341337 9/26 (35%)
TM helix 2 76..101 CDD:341337 14/26 (54%)
TM helix 3 112..142 CDD:341337 9/29 (31%)
TM helix 4 154..176 CDD:341337 3/21 (14%)
TM helix 5 204..233 CDD:341337 7/31 (23%)
TM helix 6 240..270 CDD:341337 11/29 (38%)
TM helix 7 282..307 CDD:341337 9/24 (38%)

Return to query results.
Submit another query.