DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and UBC4

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_009638.1 Gene:UBC4 / 852376 SGDID:S000000286 Length:148 Species:Saccharomyces cerevisiae


Alignment Length:143 Identity:56/143 - (39%)
Similarity:83/143 - (58%) Gaps:9/143 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVV 98
            |||:.|||.:|........||.|.|::::.|..:|.||.::.|:|..:.||:.||..||:..|.:
Yeast     4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKI 68

  Fly    99 KFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW-NDQK 162
            .|.|..:|||::..|.||||||||:||....:..:||||.|||.:.|.:.||..:.|.:: .|:.
Yeast    69 SFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRP 133

  Fly   163 EY--------KKY 167
            :|        |||
Yeast   134 KYEATAREWTKKY 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 53/140 (38%)
UQ_con 36..172 CDD:278603 54/141 (38%)
UBC4NP_009638.1 UBCc 3..147 CDD:412187 56/143 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53976
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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