DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and CDC34

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_010339.1 Gene:CDC34 / 851624 SGDID:S000002461 Length:295 Species:Saccharomyces cerevisiae


Alignment Length:159 Identity:46/159 - (28%)
Similarity:82/159 - (51%) Gaps:22/159 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 RLHKELMNLMMANERGISAF----PDGENIFKW-VGTIAGPRNTVYSGQTYRLSLDFPNSYPYAA 95
            |.::||.:    .::.|.:|    .|..|||.| :|.:....:::|.|..::..:.||..:|::.
Yeast    14 RQYRELTD----PKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSP 74

  Fly    96 PVVKFLTSCFHPNVDLQGAICLDIL------------KDKWSALYDVRTILLSIQSLLGEPNNES 148
            |..:|..:.:||||...|.:|:.||            .:.||.:..|.::|:||.|||.:||..|
Yeast    75 PQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINS 139

  Fly   149 PLNAQAAMMW-NDQKEYKKYLDAFYEKHK 176
            |.|..||:.: .:.::||:.:....|:.|
Yeast   140 PANVDAAVDYRKNPEQYKQRVKMEVERSK 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 43/147 (29%)
UQ_con 36..172 CDD:278603 44/153 (29%)
CDC34NP_010339.1 COG5078 3..170 CDD:227410 46/159 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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