DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and ube2k

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001005662.1 Gene:ube2k / 448153 XenbaseID:XB-GENE-983372 Length:200 Species:Xenopus tropicalis


Alignment Length:133 Identity:52/133 - (39%)
Similarity:76/133 - (57%) Gaps:1/133 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVK 99
            ||..||::.....::..|......||..:..|.||||.:|.|.|..|:|.:..|.:||:..|.|:
 Frog    10 KREFKEVLKSEETSKNQIKVDLVDENFSELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR 74

  Fly   100 FLTSCFHPNV-DLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQKE 163
            |:|..:|||: .:.||||||||||:|:|...:||:|||:|:||.....:.|.:|..|..:....|
 Frog    75 FITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPE 139

  Fly   164 YKK 166
            ..|
 Frog   140 MFK 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 51/131 (39%)
UQ_con 36..172 CDD:278603 51/132 (39%)
ube2kNP_001005662.1 UQ_con 8..149 CDD:365926 52/133 (39%)
UBA_II_E2_UBE2K 163..200 CDD:270573
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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