DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and ube2d1b

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_955958.1 Gene:ube2d1b / 324015 ZFINID:ZDB-GENE-030131-2735 Length:147 Species:Danio rerio


Alignment Length:142 Identity:55/142 - (38%)
Similarity:85/142 - (59%) Gaps:1/142 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVK 99
            ||:.|||.:|........||.|.|:::|.|..||.||.::.|.|..:.|::.||..||:..|.|.
Zfish     4 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVA 68

  Fly   100 FLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW-NDQKE 163
            |.|..:|||::..|:||||||:.:||....|..:||||.|||.:||.:.||....|.:: :|:::
Zfish    69 FTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEK 133

  Fly   164 YKKYLDAFYEKH 175
            |.:....:.:|:
Zfish   134 YNRLAREWTQKY 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 54/131 (41%)
UQ_con 36..172 CDD:278603 53/136 (39%)
ube2d1bNP_955958.1 UBCc 1..146 CDD:412187 55/142 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53976
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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