DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and ube2d4

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_012814892.1 Gene:ube2d4 / 100497147 XenbaseID:XB-GENE-962537 Length:159 Species:Xenopus tropicalis


Alignment Length:153 Identity:57/153 - (37%)
Similarity:88/153 - (57%) Gaps:5/153 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SMPVKDNHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFP 88
            |.|...|:::|    .|||:|........||.|.||::|.|..||.||.::.:.|..:.|::.||
 Frog     9 SFPTFINYSLS----VELMDLQRDPPAQCSAGPVGEDLFHWQATIMGPNDSPFQGGVFFLTIHFP 69

  Fly    89 NSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQ 153
            ..||:..|.|.|.|..:|||::..|:||||||:.:||....|..:||||.|||.:||.:.||..:
 Frog    70 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPE 134

  Fly   154 AAMMWN-DQKEYKKYLDAFYEKH 175
            .|..:. |:::|.:....:.:|:
 Frog   135 IAHTYKADREKYNRLAREWTQKY 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 53/135 (39%)
UQ_con 36..172 CDD:278603 52/136 (38%)
ube2d4XP_012814892.1 COG5078 21..159 CDD:227410 53/137 (39%)
UBCc 21..158 CDD:294101 53/137 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53976
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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