DRSC/TRiP Functional Genomics Resources

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Protein Alignment vih and Ube2e1

DIOPT Version :9

Sequence 1:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster
Sequence 2:XP_038949665.1 Gene:Ube2e1 / 100366017 RGDID:2324438 Length:310 Species:Rattus norvegicus


Alignment Length:188 Identity:64/188 - (34%)
Similarity:85/188 - (45%) Gaps:33/188 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NISPEQSGGAGGGGSKHSDD---------------------SMPVKDNHAVS------------K 35
            ::.|....|.|||.:...||                     |.|.|....||            |
  Rat   103 SLRPGPFAGWGGGFAMSDDDSRASTSSSSSSSSNQQTEKEGSTPKKKESKVSMSKNSKLLSTSAK 167

  Fly    36 RLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF 100
            |:.|||.::.:......||.|.|:||::|..||.||..:||.|..:.|.:.|...||:..|.|.|
  Rat   168 RIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTF 232

  Fly   101 LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW 158
            .|..:|.|::.||.||||||||.||....:..:||||.|||.:.|...||....|..:
  Rat   233 RTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vihNP_648582.1 COG5078 31..166 CDD:227410 54/140 (39%)
UQ_con 36..172 CDD:278603 51/123 (41%)
Ube2e1XP_038949665.1 PHA03378 <19..>108 CDD:223065 1/4 (25%)
UQ_con 168..305 CDD:395127 51/123 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53976
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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