DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgl and BUD5

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_009967.2 Gene:BUD5 / 850405 SGDID:S000000634 Length:642 Species:Saccharomyces cerevisiae


Alignment Length:605 Identity:109/605 - (18%)
Similarity:216/605 - (35%) Gaps:165/605 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 YDDLDVSSAVLNAERKVVASLKYLCACTGATLRNLSKKTKDLHAKNYTYTKPTWRLWGEEHEKNA 203
            |:|..|...:|::.|..|..|....||..... .|.|:::|:...........:|| |.:...:|
Yeast    92 YNDNIVPKKILDSMRTAVRQLLEATACVSREC-PLVKRSQDIKRARKRLLSDWYRL-GADANMDA 154

  Fly   204 IFTVYLKKVRY---HRPTPTASNDSDDE----ISH-LEWETVRVRFVKAATLARLV----EALAT 256
            :..|.....|:   .||...:...:..|    |:| |....|.::.|.|  |.:||    :.|.:
Yeast   155 VLLVVNSAWRFLAVWRPFVNSIQHATQELYQNIAHYLLHGNVNIQRVTA--LIQLVMGQDDLLFS 217

  Fly   257 DDGELESTF-INVFLS-----------------------TYRTFSTPKQVLSLLTQRYDALHEKH 297
            .|..|:..| |.::|:                       .:|.::|...:|..|...|..:::..
Yeast   218 MDDVLQEVFRIQLYLNKMLPHNSHKWQKPSPFDSANLLLNFRDWTTDNALLQELLLSYPTINKNK 282

  Fly   298 LEELEQAQQNGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHEDNLQQILAFATKRLKR 362
                                    |:.|  ::...:.:|::.:.:| .|..|:.||.|....|..
Yeast   283 ------------------------HKNH--SVPRLIQIWVESYWQD-SETTLKDILNFWYSHLAE 320

  Fly   363 SDLHIKVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFN 427
            ...:.::...:.:|                     :::..|::|::     .||   ..|||:..
Yeast   321 YYEYQELFADIVQL---------------------FINKKRTRQLK-----IHY---IGLTDKEI 356

  Fly   428 GMYLSPMGHGPIY----------------------------RGPTHFLQAFRFPHVPVRHFAEQL 464
            .....|:.:..::                            :|....::||.. :|.....|:.|
Yeast   357 EENKPPLDYENLFLQYEIDKTNANDELCGATDLSDLLFQWKQGELLEVEAFAL-NVSPWSLAKTL 420

  Fly   465 TRMDTELFKRLIPHQCLGHTWARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNIS 529
            |.:::.|:..:...:...|  .:.:....::|....||        :||.:::....|..  .||
Yeast   421 TLLESSLYLDIETIEFTRH--FKHNDTTIDSVFTLSNQ--------LSSYVLETTLQQTH--TIS 473

  Fly   530 RWIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLR 594
            .|:.:|.....|:|.:||.:||::|.::||.|||...:|   :...:|..|..:...:||....|
Yeast   474 YWLQVALSCLYLRNLNSLASIITSLQNHSIERLSLPIDV---KSDHLFQRLKVVVHPNNNYNVYR 535

  Fly   595 EVLKREGTAKNPDPGSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKL 659
            ..:|....::.|                         .:|:....:.|:|.|...|..:..:...
Yeast   536 RTIKHIFHSQLP-------------------------CVPFTSLLIRDITFIRDGNDTFTKDGNN 575

  Fly   660 INFDKKRKEFEVLAQIKLLQ 679
            :|..|..:..:::|..:.||
Yeast   576 VNMQKFNQITKIVAFAQYLQ 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 25/159 (16%)
RasGEF 454..719 CDD:214539 46/226 (20%)
RalGDS_RA 858..946 CDD:176351
BUD5NP_009967.2 RasGEFN 230..339 CDD:214571 17/156 (11%)
RasGEF 409..640 CDD:214539 46/228 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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