DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgl and rasgef1a

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_012822158.1 Gene:rasgef1a / 734010 XenbaseID:XB-GENE-5739365 Length:485 Species:Xenopus tropicalis


Alignment Length:504 Identity:106/504 - (21%)
Similarity:191/504 - (37%) Gaps:116/504 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 AATLARLVEALA-TDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQ- 306
            :.:|..|:|.|. |.|...:.|:|..||.:.|.|..|.::|:.:.|..          ::|.|| 
 Frog    49 SGSLEVLIERLVPTLDYYPDKTYIFTFLLSARIFIHPYEILAKVGQMC----------IKQKQQL 103

  Fly   307 -NGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHEDNLQQILAFATKRLKRSDLHIKVL 370
             :|...|.|.      .:.....::..|..|.:.||.|:.::..::.:....:|:.:.|      
 Frog   104 ESGSEADKAK------LKSFAAKIIQLLREWTETFPFDFQDERARKEMKEIAQRITQCD------ 156

  Fly   371 NRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMYLSPMG 435
                                 |.||....|.::..|....::.|. |...::.::..    .|:.
 Frog   157 ---------------------EENGTIKKSISQMTQNVLVVLSTR-GQFQEVREKIR----QPVS 195

  Fly   436 -HGPIYR-----GPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIP---------------HQ 479
             .|.|.:     .....|.....|.:    .|:|||.::.|....:.|               |:
 Frog   196 DKGTILKTKPQSAQKDILSVCSDPLI----LAQQLTTIELERLGNIFPEDLMQIISHMDSLDNHK 256

  Fly   480 CLGHTWARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNF 544
            |      |.|...:..:.|..|.||. |..:|::.:...:|.::|...:..:||:|:|...:.||
 Frog   257 C------RSDVTKTYNLEAYDNWFNC-LSMLVATEICKVVKKKQRTRVMEFFIDVARECFNIGNF 314

  Fly   545 SSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTE----LANICSEDNNAWTLREVLKREGTAKN 605
            :|:.||||.:|.:.:.||.|.|..:...:.:|...    .:|.|   |....|:...:|..:|  
 Frog   315 NSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPSSNFC---NYRTALQGATQRSQSA-- 374

  Fly   606 PDPGSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFE 670
                  :|.|  :|::           ||....|:.|:..:|..:.:.| .|..|||   :|.:|
 Frog   375 ------NSSR--EKIV-----------IPVFNLFIKDIFFLHKIHSNRL-PNGHINF---KKFWE 416

  Fly   671 VLAQI-KLLQGAANTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPP 718
            :..|| ..|.........:.|.....:..:.|::.|...|..|...|.|
 Frog   417 ISRQIHDFLTWKQVECPYEKDKKIQTYLLTTPIYTEEALFLASFENEGP 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 28/134 (21%)
RasGEF 454..719 CDD:214539 66/285 (23%)
RalGDS_RA 858..946 CDD:176351
rasgef1aXP_012822158.1 REM 51..168 CDD:100121 32/159 (20%)
RasGEF 218..465 CDD:214539 66/285 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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