DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and rgl2

DIOPT Version :10

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_005158441.1 Gene:rgl2 / 65227 ZFINID:ZDB-GENE-010131-1 Length:744 Species:Danio rerio


Alignment Length:812 Identity:241/812 - (29%)
Similarity:394/812 - (48%) Gaps:156/812 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 LSKKTKDLHAKNYTYTKP-----TW------RLWGEEHEKNAIFTVYLKKVRYHRP-TPTASNDS 225
            |.|:::...|.::|..:|     ||      ....|..|...|:||.:|:    .| :||:...:
Zfish    40 LWKESEHREADHHTQGEPSPMKTTWYCPLDLSTVSEMEEDGIIYTVVVKQ----GPGSPTSPQST 100

  Fly   226 DDEISHLEWETVRVRFVKAATLARLVEALATDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRY 290
                      ..|.:.|||.|..:||..|.......:|:||::||||||:|::.::||.:|..|.
Zfish   101 ----------AARSQHVKAGTEEKLVLHLLHSFSMGDSSFISIFLSTYRSFTSTQRVLDILICRL 155

  Fly   291 DALHEKHLEELEQAQQNGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHE----DNLQQ 351
            :                    :|..:.|::..:...|.:.:....|:..:|||:..    ..|.:
Zfish   156 E--------------------NPPGESHSNSRQMFNKAVCTVFSTWMTDYPEDFRSLSDPSRLLR 200

  Fly   352 ILAFATKRLKRSDLHIKVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHY 416
            :..........:::..::|...|.|.:::|                 |||:.|...:..:.|.: 
Zfish   201 LAPLLPTDSSGAEIKSRLLRIAEELSEKTL-----------------LSASLSDPTKGLLSPPN- 247

  Fly   417 GSSYDLTDQFNGMYLSPMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCL 481
            .|.:|.|        |.:|                ||...:   ||||||::|:||.:|:||.||
Zfish   248 PSDFDAT--------SVLG----------------FPSSVI---AEQLTRIETDLFLKLVPHHCL 285

  Fly   482 GHTWARRDSGGSE----TVVATINQFNAVLFRVVSSIL-IDRLKPQERALNISRWIDIAQELRML 541
            |..|::||..|.|    :|.|||.|||.:...|.:|.| :..||.|:||..:.:||.:|:..|..
Zfish   286 GSLWSQRDKKGQEGACWSVRATIKQFNRLANAVTASCLWMTTLKSQQRARLLEKWISVAEACRTR 350

  Fly   542 KNFSSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNP 606
            ||||||.||:|||.||.|:||.|.|:...:|.::.:.||::|.||.:|....||:||.|||:|..
Zfish   351 KNFSSLYAILSALQSNPIHRLRKTWQETDREAVKRYEELSDIFSEKDNYSQSRELLKEEGTSKFA 415

  Fly   607 DPGSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEV 671
            :..:..::|...       ...:.||:||||.||.||||:.||..|.| ||..|||||:|:||||
Zfish   416 NHDTKINNRRFT-------GSCAQGTVPYLGIFLRDLTMLDTAVKDRL-ENGFINFDKRRREFEV 472

  Fly   672 LAQIKLLQGAANTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPP-PPAPRKSVVSTNTSLTN 735
            :|||:|||.:......:.|..|.||::|:|...|.|:::||.::|.| .|:|.:.:   |.::..
Zfish   473 IAQIRLLQSSCKNSIFRTDETFIHWYHSVPTLREEESYKLSNQIEAPGEPSPGRGL---NPTVII 534

  Fly   736 TTASSTASIMGHRKTDSIHSNSSSGAGSQFYCELNSSTSSRHNSLDRDVHHQHASLMSASSSVSN 800
            |......|.:         :|::..|...|  :..|..:...:.|.:.|         .|.|||.
Zfish   535 TQCPDALSAV---------ANTTMDADGIF--DFPSPVNQLLSKLCKHV---------KSPSVSC 579

  Fly   801 LSLDSSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINAQLVQPSSGTPHSAPDFYIIRVT 865
            |.:|||......:..:..:.:  ..:|||....:.|.:         |::..|.:.||..|:|: 
Zfish   580 LDVDSSPPSNDSTPSILTTPT--TAVKSHRRSVSCGNN---------PTNSKPEAGPDMRIVRI- 632

  Fly   866 YETDNIELDGIVLYKSIMLGNNERTPQVIRNAMLKLGLE-DDPDRFTLAQVLPD-KELVMPKNAN 928
                .::|....||:||::.:|::||.||.:|:.|.... .:..::.|.|:||: |||::|...|
Zfish   633 ----RMDLHDGNLYRSILVTSNDKTPTVISSALEKHNQNAQEASKYELIQLLPEGKELIIPPTGN 693

  Fly   929 VYYAVNTNYNLNFILRPRKEEGVAGSXSTAVP 960
            |:||: ::.:::|:||.|     .|: .|..|
Zfish   694 VFYAM-SSASVDFLLRRR-----GGNTPTGSP 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 29/135 (21%)
RasGEF 454..719 CDD:214539 119/270 (44%)
RA_RalGDS_like 858..946 CDD:340449 30/89 (34%)
rgl2XP_005158441.1 REM 111..>190 CDD:100121 25/98 (26%)
RasGEF 256..519 CDD:214539 121/289 (42%)
RA_RGL2 625..710 CDD:340731 31/90 (34%)

Return to query results.
Submit another query.