DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgl and rasgrp3

DIOPT Version :10

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001103934.1 Gene:rasgrp3 / 563441 ZFINID:ZDB-GENE-070424-82 Length:708 Species:Danio rerio


Alignment Length:539 Identity:118/539 - (21%)
Similarity:201/539 - (37%) Gaps:140/539 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 KAATLARLVEAL--ATDD-GELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQA 304
            |||:|..|::|.  |.|| |||....:.      |||        ||      :|..::...|.|
Zfish     8 KAASLELLLDACIHAFDDKGELHENQLP------RTF--------LL------MHRWYVSSTELA 52

  Fly   305 QQNGQVMDPAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHED----NLQQILAFATKRLKRSDL 365
               |:::....|......::.:..:...:..|:..||.::..|    .|.:....|...| ..|.
Zfish    53 ---GKLLIMYRDCRGDDCQRTRLKICYLMRYWIAEFPAEFDLDLGLIRLTEEFRDAAAEL-GGDK 113

  Fly   366 HIKVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMY 430
            |||:|:.                  |....:.|:.....::.|                      
Zfish   114 HIKLLDI------------------STIPSYDWMRKLTQRKKQ---------------------- 138

  Fly   431 LSPMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRL--------IPHQCLGHTWAR 487
                    :.:|....|    |.|:.....||.||.::.:..:|:        :.|.||      
Zfish   139 --------VKKGKASLL----FDHLEPIELAEHLTFLEYKSIRRISFTDYQSYVIHGCL------ 185

  Fly   488 RDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIIS 552
               ..:.|:..:|..||.: .:.|..:::.:|.||.||..|:::|.:||:|..|:||::|.|::.
Zfish   186 ---VDNPTLERSIALFNGI-SQWVQLMVLSKLTPQHRAEVITKYIHVAQKLLHLQNFNTLMAVVG 246

  Fly   553 ALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHL 617
            .|:.:||.||.:....|..|..:::.|:..:.|.:.|....|   |..|.:|.            
Zfish   247 GLSHSSISRLKETHSHLSPEVTKIWNEMTELVSSNGNYCAYR---KAFGESKG------------ 296

  Fly   618 QKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQIKLLQGAA 682
                         ..||.||..|.||..:|....|::.:.| :|..|.::.|....::..||.|.
Zfish   297 -------------FKIPILGVHLKDLIAVHVVFADWVEDGK-VNIAKMQQLFLTFNELVSLQSAV 347

  Fly   683 NTYNLQADALFDHWFNSMPVFDEREAFELSCRLEP--------PPPAPRKSVVSTNTSLTNTTAS 739
            .......|.::....:....:.|.|.:|||...||        .|..|.|.:...:.:...||..
Zfish   348 AQVEPNMDLIYLLNLSLDLYYTEDEIYELSLLREPRNPKSQPTSPTTPNKPLAPLDWASGVTTKP 412

  Fly   740 STASIMGH-RK-TDSIHSN 756
            ..:.:..| || .||:..|
Zfish   413 DPSVVNKHIRKVVDSVFRN 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 31/138 (22%)
RasGEF 454..719 CDD:214539 67/280 (24%)
RA_RalGDS_like 858..946 CDD:340449
rasgrp3NP_001103934.1 REM 11..>102 CDD:100121 24/113 (21%)
RasGEF 148..384 CDD:214539 68/274 (25%)
FRQ1 <414..478 CDD:444056 6/18 (33%)
C1_RASGRP3 488..546 CDD:410412
Blue background indicates that the domain is not in the aligned region.

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