DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and rasgrp4

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_005173714.1 Gene:rasgrp4 / 558453 ZFINID:ZDB-GENE-050419-110 Length:725 Species:Danio rerio


Alignment Length:545 Identity:110/545 - (20%)
Similarity:192/545 - (35%) Gaps:151/545 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 YDALHEKHLEELEQAQQNGQVMD--PAYDPHASIHEQHKKTLVSALHVWLDGFPEDWHEDNLQQI 352
            :|.::.|..:...:::|.|.:..  |.         |.:.|..||                 |:|
Zfish     3 FDTMNRKESKSSRKSRQEGGIKSRRPV---------QRRMTCPSA-----------------QEI 41

  Fly   353 LAFATKRLKRSDLHIKVLN-RLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTH- 415
                ::.|:....|....: .|:.||.:.|:  ...|.|..|.|...:|  .:..|..:::|:| 
Zfish    42 ----SRALQSPPAHASFRSASLDELILRCLH--CFDSDGKLNRGTQLVS--MTLMMHNWVVPSHI 98

  Fly   416 ------------------------------YGSSYDLTDQFNGMYLSPMG--------------- 435
                                          :.|.:.|..:.:.:....||               
Zfish    99 FAHKLLSLYKDCPAEKRGQRRPQICHFIRQWISQFRLMFEMDPLLEKAMGDLWALVSAEGTNSHH 163

  Fly   436 ---HGPIYRGPTHFLQ-----------AFRFPHVPVRHFAEQLTRMDTELF--------KRLIPH 478
               :.|....|.:..|           :..|.|:.....||.|:.::.:.|        :..:.|
Zfish   164 QLINTPYINPPVNISQTPSPLVKKRKVSLLFDHMEPDEMAEHLSYLEFKNFCNVSFLDYRSYVVH 228

  Fly   479 QCLGHTWARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKN 543
            ..:      ||:...|..|...|..:    :.|..::::|...|:||...:::|.:||:||.|:|
Zfish   229 GSV------RDNPALERSVMLCNGVS----QWVQLMILNRHTSQQRAEVFTKFIHVAQKLRSLQN 283

  Fly   544 FSSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDP 608
            |::|.|:|..|..:||.||.....:|..:..:..:||..:.|..:|....|.|.           
Zfish   284 FNTLMAVIGGLCHSSISRLKDTASLLSSDVTKTLSELTELLSSYSNYSNYRRVY----------- 337

  Fly   609 GSDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLA 673
                             ::.:...:|.||..|.||..::.|.||||.::| ||..|.:..:..::
Zfish   338 -----------------SECTGFKVPILGVHLKDLISLNEALPDYLEDDK-INLGKLQHLYSNIS 384

  Fly   674 QIKLLQGAANTYNLQADALFDHWFNSMPVFDEREAFELSCRLEP-----PPPAPRKSVVSTNTSL 733
            .:..:......:....|.|.....:....:.|.|.:|||...||     .|.||.|..|......
Zfish   385 DLLAIHDCTPPFEANKDLLHLLTLSLDLYYTEDEIYELSYAKEPKNPKIQPVAPVKPPVVAEWGS 449

  Fly   734 TNTTASSTASIMGHRK--TDSIHSN 756
            ..|.....|:|..|.|  .|||..|
Zfish   450 GVTPRLDPATISKHVKQMVDSIMKN 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 15/90 (17%)
RasGEF 454..719 CDD:214539 63/277 (23%)
RalGDS_RA 858..946 CDD:176351
rasgrp4XP_005173714.1 REM 58..162 CDD:100121 16/107 (15%)
RasGEF 194..430 CDD:214539 64/274 (23%)
EF-hand_7 473..519 CDD:290234 1/2 (50%)
EFh 475..524 CDD:298682 110/545 (20%)
C1_1 537..586 CDD:278556
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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