DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and PDZ-GEF

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster


Alignment Length:911 Identity:186/911 - (20%)
Similarity:304/911 - (33%) Gaps:309/911 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KSHTCAYQLQDLTGYNRALMPPLDNTDF----------------------SNAWRQ----VNNNT 63
            :|.:...:|..::..|||.|..|.:.|.                      ||..:|    |||::
  Fly   546 RSDSTTDELSSVSASNRAHMVRLSSVDMLLDQPDCAPPQTPPVSGSGNMASNFMQQLLQSVNNSS 610

  Fly    64 TSQSCAYHQQRQQQQQQQDAKDSKRHYHHHTCPRQRKKSMTPVEPTHLCQKHQEAKQRRSRSASA 128
            ..:|..     .....|||.|..               .||            .|.:||.:.|.|
  Fly   611 AKKSGG-----NSNSDQQDTKGG---------------FMT------------LAPKRRLQKALA 643

  Fly   129 KPR-RNSSYHSYDDLDVSSAVLNAERKVVASLKYLCACTGATLRNL-------------SKKTKD 179
            |.. .|...|.....|.|..:||..:   :.|..:.:|:.:|..::             |:...|
  Fly   644 KMNLLNKQNHGSSLNDSSDTLLNDPK---SKLSAVSSCSSSTQSSINGCTVSGGGRLYQSQSNPD 705

  Fly   180 LHAKNYTYTKPTWRLWGEEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKA 244
            |.:.||..........|...:.|     || ....|||:..::..::...||             
  Fly   706 LTSLNYDGGSDAGGNGGGRLQVN-----YL-NAHIHRPSAASTLTTNSTQSH------------- 751

  Fly   245 ATLARLVEALATDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQ 309
                            |...:.:..|..|:...|.|.|   |..:....||..:..|::      
  Fly   752 ----------------LLPDYPDHVLKVYKADQTCKYV---LIYKETTAHEVVMLTLQE------ 791

  Fly   310 VMDPAYDPHASIHEQHKKTLVSALHVWLDG-------FPEDWHEDNLQQILAFATKRLKRSDLHI 367
                     ..||:......:..:.|. ||       .|:..  .||.:.::||.:      .::
  Fly   792 ---------FGIHDPSSNFSLCEVSVG-DGGMVKQRRLPDQL--QNLAERISFAAR------YYL 838

  Fly   368 KVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMYLS 432
            |:.:..|.|:...|                                     :.:|..:.|     
  Fly   839 KLNDSTEPLVPDEL-------------------------------------ALELVRESN----- 861

  Fly   433 PMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSETVV 497
                       .|||      |:.....|.|||..|...|:::...:.:...:..|...|    |
  Fly   862 -----------VHFL------HLNAYELAIQLTLQDFANFRQIESTEYVDELFELRSRYG----V 905

  Fly   498 ATINQF----NAVLFRVVSSI-----LIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIISA 553
            ..:::|    |..:|.|||.|     ::.|:|      .:.::|.||:..:..:||:|:.||:|.
  Fly   906 PMLSKFAELVNREMFWVVSEICAEHNIVRRMK------IVKQFIKIARHCKECRNFNSMFAIVSG 964

  Fly   554 LNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHLQ 618
            |...::.||.:.||.||.:...:|.:|.::.....|....|:::..|..|::|            
  Fly   965 LGHGAVSRLRQTWEKLPSKYQRLFNDLQDLMDPSRNMSKYRQLVSAELLAQHP------------ 1017

  Fly   619 KLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLA-QIKLLQGAA 682
                         .||:......|||.||..|...:  :.||||:|.|    :|| :::||    
  Fly  1018 -------------IIPFYPIVKKDLTFIHLGNDTRV--DGLINFEKLR----MLAKEVRLL---- 1059

  Fly   683 NTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPPPPAPRKSVVSTN---TSLTNTTASST--- 741
                       .|..:|        .::|...||....:|..::.|.|   .|.:|..|.:.   
  Fly  1060 -----------THMCSS--------PYDLLSILELKGQSPSNALFSLNQMSASQSNAAAGTVIAA 1105

  Fly   742 ----ASIMGHRKTDSIHSNSSSGAGSQFYCELNSSTSSRHNSLDRDVHHQ--------HASLMSA 794
                |:|...:|:.:..:.......:|....:.:..:|.....|.|:.|:        |.|..|.
  Fly  1106 NAGQATIKRRKKSTAAPNPKKMFEEAQMVRRVKAYLNSLKILSDEDLLHKFSLECEPAHGSTYSG 1170

  Fly   795 SSSVSNLSLDSSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINA--QLVQPSSGTPHSAP 857
            |.|..|.| ..|..||..||        |.|..|.|.|   |||..:||  ||...|..:..|||
  Fly  1171 SISHGNTS-HRSGGGGSISG--------GAGGSSGGGG---GGSSSLNAGDQLSIYSHTSSSSAP 1223

  Fly   858 D 858
            :
  Fly  1224 N 1224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 23/138 (17%)
RasGEF 454..719 CDD:214539 65/274 (24%)
RalGDS_RA 858..946 CDD:176351 0/1 (0%)
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 20/110 (18%)
RasGEF 871..1050 CDD:279011 54/215 (25%)
Rhomboid_SP 1252..>1357 CDD:289371
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467928
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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