DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgl and Rgl3

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001100275.1 Gene:Rgl3 / 300444 RGDID:1309756 Length:346 Species:Rattus norvegicus


Alignment Length:348 Identity:118/348 - (33%)
Similarity:166/348 - (47%) Gaps:67/348 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 KTLVSALHVWLDGFPEDWHE----DNLQQILAF------ATKRLKRSDLHIKVLNRLERLIKQSL 381
            :.:||.|..||...|:|:.:    .||..:..|      ....::.::      ..||..:|::.
  Rat    44 RAVVSVLGSWLRDHPQDFRDPPDHQNLGDVRIFLGWAAPGGAEVREAE------KLLEDFLKEAK 102

  Fly   382 YGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMYLSPMGHGPIYRGPTHF 446
            .....|.......|..|  ||:|.:       :.:...|...:            |....||.  
  Rat   103 EEQTEGEQRLAWAGPPW--AAQSPR-------SEFAEDYSEEE------------GLRSEGPE-- 144

  Fly   447 LQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRD----SGGSETVVATINQFNAVL 507
            |..|....|     |||||.||.|||.|:...:|||..|::||    :|.|.||.||:.|||||.
  Rat   145 LLDFSVDEV-----AEQLTLMDVELFLRVRSCECLGSMWSQRDRPGAAGISPTVRATVAQFNAVT 204

  Fly   508 FRVVSSIL-IDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIWEVLPK 571
            ..|:.|:| ...|...:||..|.:||.|||..|.|:|||||:||:|||.||.||||.:.|..:.:
  Rat   205 GCVLGSVLAAPGLAASQRAQRIEKWIRIAQRCRELRNFSSLRAILSALQSNPIYRLKRSWGAVSR 269

  Fly   572 ERMEVFTELANICSEDNNAWTLREVLKREGTAKNP-----DPGSDHSDRHLQKLILNLGTQTSHG 631
            |.:.||.:|:.|.|:::|..:.|.:|.:|.|.:.|     .|||             |.::...|
  Rat   270 EPLSVFRKLSQIFSDEDNHLSSRAILSQEETTEGPQGDDCSPGS-------------LPSKLPPG 321

  Fly   632 TIPYLGTFLTDLTMIHTANPDYL 654
            .:||||||||||.|:.||.||.|
  Rat   322 PVPYLGTFLTDLVMLDTALPDML 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 12/60 (20%)
RasGEF 454..719 CDD:214539 93/211 (44%)
RalGDS_RA 858..946 CDD:176351
Rgl3NP_001100275.1 REM <36..100 CDD:295342 12/61 (20%)
RasGEF 152..345 CDD:279011 93/211 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2941
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116220at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1296
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.920

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