DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and Rapgefl1

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_001074394.1 Gene:Rapgefl1 / 268480 MGIID:3611446 Length:662 Species:Mus musculus


Alignment Length:635 Identity:128/635 - (20%)
Similarity:226/635 - (35%) Gaps:176/635 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 TGATLRNLSKKTKDLHAKNYTYTKPTWRLWG----EEHEKNAIFTVYLKKVRYHRPTPTASNDSD 226
            :|..||:.|..:.|..:.......|.|...|    .||..|.:..      |....|...|:.||
Mouse   116 SGVPLRSPSSYSSDELSPGEPLASPPWAPLGAPERPEHLLNRVLE------RLAGGTTRDSSASD 174

  Fly   227 ---DEI--------------SHLEWETVRVRFV--------KAATLARLVEALATDDGEL--EST 264
               |:|              ..|....|:.|.|        |.|.||.|:..|.|..|.|  |..
Mouse   175 ILLDDIVLTHSLFLPTEKFLQELHQYFVQSRNVEGPEGLGRKQACLALLLHFLDTYQGLLQEEEG 239

  Fly   265 FINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEEL------EQAQQNGQVMDPAYDPHASIHE 323
            ..::....|......:.:...|  |.|.|....|.|.      |::|...:.:.|.:        
Mouse   240 AGHIIKELYLLIMKDESLYQDL--REDTLRLHQLVETVELKIPEESQPPSKQVKPLF-------- 294

  Fly   324 QHKKTLVSAL--HVWLDGFPEDW-------H---------EDNLQQILAFATKRLKRSD------ 364
            :|.:.:.|.|  .|...|..|.:       |         ..::|.||...|::|:.|:      
Mouse   295 RHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAERE 359

  Fly   365 ---LHIKVLNRLERLIKQSLYGNGGGSGGSEN--------NGHSWLSAARSQQMQQFMIPTHYGS 418
               :.:.|.:..|:::.|.          :|:        |.|.:   |.::...:.::|     
Mouse   360 DALILVAVASSGEKVLLQP----------TEDCVFTTLGINSHLF---ACTRDSYEALVP----- 406

  Fly   419 SYDLTDQFNGMYLSPMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGH 483
               |.::   :.:|| |...|:|             |.....|..||....|||:.:...:.:.:
Mouse   407 ---LPEE---VQVSP-GDTEIHR-------------VEPEDVANHLTAFHWELFRCVHELEFVDY 451

  Fly   484 TW----ARRDSGGSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNF 544
            .:    .||::...|.:   :.:.:.|...|.:.:|:.. .|.:|...:.::|.||...:..::.
Mouse   452 VFHGERGRRETANLELL---LQRCSEVTHWVATEVLLCE-APGKRVQLLKKFIKIAAICKQNQDL 512

  Fly   545 SSLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPG 609
            .|..|::..|::.::.||...||.||.:...:|.:...:.....|..:.|||:.:   .|.|   
Mouse   513 LSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFEGLTDPCRNHKSYREVISK---MKPP--- 571

  Fly   610 SDHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQ 674
                                  .||::...|.|||.:|..:...:  :.|:|.:|.....|.:..
Mouse   572 ----------------------LIPFVPLILKDLTFLHEGSKTLV--DGLVNIEKLHSVAEKVRT 612

  Fly   675 IK-------LLQGAANTYNLQADALFDHWFNSMPVFD-EREAFELSCRLE 716
            |:       .|...|:.::||..|    :.....|.| :...||||.:||
Mouse   613 IRKYRSRPLCLDMEASPHHLQTKA----YVRQFQVIDNQNHLFELSYKLE 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 33/166 (20%)
RasGEF 454..719 CDD:214539 59/275 (21%)
RalGDS_RA 858..946 CDD:176351
Rapgefl1NP_001074394.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..149 8/32 (25%)
RasGEF 420..658 CDD:214539 59/288 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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