DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and ste6

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:NP_588316.1 Gene:ste6 / 2538724 PomBaseID:SPCC1442.01 Length:911 Species:Schizosaccharomyces pombe


Alignment Length:575 Identity:124/575 - (21%)
Similarity:212/575 - (36%) Gaps:146/575 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 LDVSSAVLN-AERKVVASLKYLCACTGATLRNLSKKTKDLHAK---NYTYTKPTWRLWGEEHEKN 202
            |.:.|.::. :||.|..||:|      ..|.|:..:..|....   .:...|..|      .:..
pombe   404 LRIKSIIVQFSERIVFLSLEY------KFLTNIQPELNDAEKSQLDGFDLNKTNW------FDSK 456

  Fly   203 AIFTVYLKKVRYHRPTP-------------TASNDSDDEISHLEWETVRVRFVKAATLARLVEAL 254
            .:....:|:.   .|.|             ....:.|.:|             |.|||..::..|
pombe   457 GLVCYLMKQT---SPEPLLIRNLLFSFWSCNGKIEQDGKI-------------KTATLVFIINYL 505

  Fly   255 ATDDGELESTFI-NVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQVMDPAYDPH 318
            ...|  ::|||. .:||:||.:..:...:.|:|...:..:...:..::....             
pombe   506 LRTD--IDSTFFTTIFLNTYASMISSSDLFSILGAHFRFICSLNFGKISFIS------------- 555

  Fly   319 ASIHEQHK--KTLVSALHVWLDGFPEDWHEDNLQQILAFATKRLKRSDLHI--------KVLNRL 373
               ||.::  |..:..|.:|.:.:..: ..||.:.|. |..|..|..::.:        ::|:.|
pombe   556 ---HEFYRVSKRFLDILLIWFESYLVE-ELDNSKSIF-FLFKIYKVFEVFVVPHFASAEELLHSL 615

  Fly   374 ERLIKQSLYGNGGGSGGSENNGHSWLSAAR-SQQMQQFMIPTHYGSSYDLTDQFNGMYLSPMGHG 437
            ..|:...          |....|..|.... ||:::            ||:     ::.||   .
pombe   616 SHLLHHP----------STKRSHKMLEGKELSQELE------------DLS-----LHNSP---D 650

  Fly   438 P-IYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSETVVATIN 501
            | ||:.....|       :|.|..|:||..::.:.|..:...|.|...|...:....:...:|..
pombe   651 PIIYKDELVLL-------LPPREIAKQLCILEFQSFSHISRIQFLTKIWDNLNRFSPKEKTSTFY 708

  Fly   502 QFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIW 566
            ..|. |...|:..::...:|:.|...::.:|.:...||.|.||:||.:|||||||:.|:||.|.|
pombe   709 LSNH-LVNFVTETIVQEEEPRRRTNVLAYFIQVCDYLRELNNFASLFSIISALNSSPIHRLRKTW 772

  Fly   567 EVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHLQKLILNLGTQTSHG 631
            ..|..:.:..|..|.|:.....|....|:.                    |:..:|        .
pombe   773 ANLNSKTLASFELLNNLTEARKNFSNYRDC--------------------LENCVL--------P 809

  Fly   632 TIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQIKLLQGAANTYN 686
            .:|:||.:.||||.:.|.|.|..  ..:|||||:.|...:|.:||..|.....:|
pombe   810 CVPFLGVYFTDLTFLKTGNKDNF--QNMINFDKRTKVTRILNEIKKFQSVGYMFN 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 27/142 (19%)
RasGEF 454..719 CDD:214539 64/233 (27%)
RalGDS_RA 858..946 CDD:176351
ste6NP_588316.1 SH3 7..55 CDD:214620
RasGEFN 489..604 CDD:214571 28/147 (19%)
RasGEF 659..895 CDD:214539 65/242 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.