DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and Rasgrf2

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_036013814.1 Gene:Rasgrf2 / 19418 MGIID:109137 Length:1190 Species:Mus musculus


Alignment Length:632 Identity:140/632 - (22%)
Similarity:233/632 - (36%) Gaps:149/632 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 EEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKAATLARLVEALATDDGEL 261
            ||:.|..:..:.....|.|:       |..|........:.:|..::.|::.||:|.| ||...|
Mouse   601 EENSKVTVPHMIKSDARLHK-------DDTDICFSKTLNSCKVPQIRYASVERLLERL-TDLRFL 657

  Fly   262 ESTFINVFLSTYRTFSTPKQVLSLLTQRY----DALHEKHLEELEQAQQNGQ--VMDP------- 313
            ...|:|.||.|||.|:|...||:.|:..|    .::..:.||......||.:  ::|.       
Mouse   658 SIDFLNTFLHTYRIFTTATVVLAKLSDIYKRPFTSIPVRSLELFFATSQNNREHLVDGKSPRLCR 722

  Fly   314 --------AYDPHASIHEQHKKTLVSALH---------------------------------VWL 337
                    |....:|.....|.:|.|:|:                                 ..|
Mouse   723 KFSSPPPLAVSRTSSPVRARKLSLTSSLNSRIGALDLTNSSSSSSPTTTTHSPAASPPPHTAAVL 787

  Fly   338 DGFPEDWHED--NLQQILAFATKRLKR---------SDLHIKVLNRLERLIKQSLYGNGGGSG-G 390
            :..|.|...|  ::....:..|.|..|         ...|..|.......|..:..|:|...| .
Mouse   788 ESAPADKAGDSADMSPCRSPTTPRHLRYRQPGGQVADSAHCSVSPASAFAIATAAAGHGSPPGFN 852

  Fly   391 SENNGHSWLSAARSQQMQQFMIPTHYGS----SYDLTDQFNGMYLSPMGHGPIYRGP-------- 443
            :|..........|:...:...:..|:.|    .::|.::.....|:.:..  :.|.|        
Mouse   853 NERTCDKEFIIRRTATNRVLNVLRHWVSKHAQDFELNNELKMNVLNLLEE--VLRDPDLLPQERK 915

  Fly   444 --THFLQAFR-------------------------FPHVPVRHFAEQLTRMDTELFKRLIPHQCL 481
              .:.|:|..                         |..:.....|||:|.:|..:|:.:...:.|
Mouse   916 ATANILRALSQDDQDDIHLKLEDIIQMTDCPKAECFETLSAMELAEQITLLDHIVFRSIPYEEFL 980

  Fly   482 GHTWARRDSG-GSETVVATINQFNAVLFRVVSSILIDRLKPQERALNISRWIDIAQELRMLKNFS 545
            |..|.:.|.. .:..::.|...||. :..:|:|.:::......||..|.:|:.:|...|.|.|::
Mouse   981 GQGWMKLDKNERTPYIMKTSQHFNE-MSNLVASQIMNYADISSRANAIEKWVAVADICRCLHNYN 1044

  Fly   546 SLKAIISALNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGS 610
            .:..|.||||.::||||.|.|..:.|:...:..:|....|.:.....|||      |.||.:|.:
Mouse  1045 GVLEITSALNRSAIYRLKKTWAKVSKQTKALMDKLQKTVSSEGRFKNLRE------TLKNCNPPA 1103

  Fly   611 DHSDRHLQKLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQI 675
                                  :||||.:||||..|....|:: ||..|:||.|.|....::.:|
Mouse  1104 ----------------------VPYLGMYLTDLAFIEEGTPNF-TEEGLVNFSKMRMISHIIREI 1145

  Fly   676 KLLQGAANTYNL-QADALFDHWFNSMPVFDEREAFELSCRLEPPPPA 721
            :..|..|  |.: |...:..:..:...|.||...:|||.::||..||
Mouse  1146 RQFQQTA--YRIDQQPKVIQYLLDKALVIDEDSLYELSLKIEPRLPA 1190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 40/196 (20%)
RasGEF 454..719 CDD:214539 74/266 (28%)
RalGDS_RA 858..946 CDD:176351
Rasgrf2XP_036013814.1 PH_RasGRF1_2 19..158 CDD:270081
RhoGEF 247..428 CDD:214619
PH 480..588 CDD:214574
RasGEF_N 638..>686 CDD:395493 20/48 (42%)
REM <853..925 CDD:413353 10/73 (14%)
RasGEF 951..1187 CDD:214539 74/267 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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